Abstract
Motivation Analysis of alternative splicing using short-read RNA-seq data is a complex process that involves several steps: alignment of reads to the reference genome, identification of alternatively spliced features, motif discovery, analysis of RNA-protein binding near donor and acceptor splice sites, and exploratory data visualization.
Results We introduce splicekit, a python package that provides a comprehensive set of tools for conducting splicing analysis.
Availability and implementation https://github.com/bedapub/splicekit and over PyPI.
Competing Interest Statement
The authors have declared no competing interest.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
Posted May 26, 2023.
splicekit: a comprehensive toolkit for splicing analysis from short-read RNA-seq
