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kmindex and ORA: indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets
Téo Lemane, Nolan Lezzoche, View ORCID ProfileJulien Lecubin, View ORCID ProfileEric Pelletier, View ORCID ProfileMagali Lescot, View ORCID ProfileRayan Chikhi, View ORCID ProfilePierre Peterlongo
doi: https://doi.org/10.1101/2023.05.31.543043
Téo Lemane
1Univ. Rennes, Inria, CNRS, IRISA - UMR 6074, Rennes, F-35000 France
Nolan Lezzoche
2Aix-Marseille Université, Université de Toulon, IRD, CNRS, Mediterranean Institute of Oceanography (MIO), UM 110, Marseille, France
Julien Lecubin
3SIP, OSU PYTHEAS, Marseille, France
Eric Pelletier
4Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Univ. Evry, Université Paris-Saclay, Evry, France
5Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GO-SEE, CNRS, Paris, France
Magali Lescot
2Aix-Marseille Université, Université de Toulon, IRD, CNRS, Mediterranean Institute of Oceanography (MIO), UM 110, Marseille, France
5Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GO-SEE, CNRS, Paris, France
Rayan Chikhi
6Institut Pasteur, Université Paris Cité, G5 Sequence Bioinformatics, Paris, F-75015, France
Pierre Peterlongo
1Univ. Rennes, Inria, CNRS, IRISA - UMR 6074, Rennes, F-35000 France
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Posted October 31, 2023.
kmindex and ORA: indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets
Téo Lemane, Nolan Lezzoche, Julien Lecubin, Eric Pelletier, Magali Lescot, Rayan Chikhi, Pierre Peterlongo
bioRxiv 2023.05.31.543043; doi: https://doi.org/10.1101/2023.05.31.543043
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