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Combinatorial Regimens Augment Drug Monotherapy for SARS-CoV-2 Clearance in Mice

View ORCID ProfileIrfan Ullah, View ORCID ProfileFanny Escudie, View ORCID ProfileIvan Scandale, Zoela Gilani, View ORCID ProfileGabrielle Gendron-Lepage, Fleur Gaudette, View ORCID ProfileCharles Mowbray, Laurent Fraisse, View ORCID ProfileRenée Bazin, View ORCID ProfileAndrés Finzi, View ORCID ProfileWalther Mothes, View ORCID ProfilePriti Kumar, View ORCID ProfileEric Chatelain, View ORCID ProfilePradeep D. Uchil
doi: https://doi.org/10.1101/2023.05.31.543159
Irfan Ullah
1Department of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, CT 06520, USA
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  • ORCID record for Irfan Ullah
Fanny Escudie
2Drugs for Neglected Diseases initiative, Geneva, Switzerland
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Ivan Scandale
2Drugs for Neglected Diseases initiative, Geneva, Switzerland
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Zoela Gilani
3Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06510, USA
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Gabrielle Gendron-Lepage
5Centre de Recherche du CHUM, Montréal, QC H2X0A9, Canada
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Fleur Gaudette
5Centre de Recherche du CHUM, Montréal, QC H2X0A9, Canada
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Charles Mowbray
2Drugs for Neglected Diseases initiative, Geneva, Switzerland
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Laurent Fraisse
2Drugs for Neglected Diseases initiative, Geneva, Switzerland
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Renée Bazin
4Hema-Quebec, Affaires Médicales et Innovation, Québec, QC G1V 5C3, Canada
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  • ORCID record for Renée Bazin
Andrés Finzi
5Centre de Recherche du CHUM, Montréal, QC H2X0A9, Canada
6Departement de Microbiologie, Infectiologie et Immunologie, Université de Montréal, Montréal, QC H2X0A9, Canada
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Walther Mothes
3Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06510, USA
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Priti Kumar
1Department of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, CT 06520, USA
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  • For correspondence: priti.kumar@yale.edu echatelain@dndi.org pradeep.uchil@yale.edu
Eric Chatelain
2Drugs for Neglected Diseases initiative, Geneva, Switzerland
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  • For correspondence: priti.kumar@yale.edu echatelain@dndi.org pradeep.uchil@yale.edu
Pradeep D. Uchil
3Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06510, USA
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  • For correspondence: priti.kumar@yale.edu echatelain@dndi.org pradeep.uchil@yale.edu
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Summary

Direct acting antivirals (DAAs) represent critical tools for combating SARS-CoV-2 variants of concern (VOCs) that evolve to escape spike-based immunity and future coronaviruses with pandemic potential. Here, we used bioluminescence imaging to evaluate therapeutic efficacy of DAAs that target SARS-CoV-2 RNA-dependent RNA polymerase (favipiravir, molnupiravir) or Main protease (nirmatrelvir) against Delta or Omicron VOCs in K18-hACE2 mice. Nirmatrelvir displayed the best efficacy followed by molnupiravir and favipiravir in suppressing viral loads in the lung. Unlike neutralizing antibody treatment, DAA monotherapy did not eliminate SARS-CoV-2 in mice. However, targeting two viral enzymes by combining molnupiravir with nirmatrelvir resulted in superior efficacy and virus clearance. Furthermore, combining molnupiravir with Caspase-1/4 inhibitor mitigated inflammation and lung pathology whereas combining molnupiravir with COVID-19 convalescent plasma yielded rapid virus clearance and 100% survival. Thus, our study provides insights into treatment efficacies of DAAs and other effective combinations to bolster COVID-19 therapeutic arsenal.

Competing Interest Statement

The authors have declared no competing interest.

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Posted June 01, 2023.
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Combinatorial Regimens Augment Drug Monotherapy for SARS-CoV-2 Clearance in Mice
Irfan Ullah, Fanny Escudie, Ivan Scandale, Zoela Gilani, Gabrielle Gendron-Lepage, Fleur Gaudette, Charles Mowbray, Laurent Fraisse, Renée Bazin, Andrés Finzi, Walther Mothes, Priti Kumar, Eric Chatelain, Pradeep D. Uchil
bioRxiv 2023.05.31.543159; doi: https://doi.org/10.1101/2023.05.31.543159
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Combinatorial Regimens Augment Drug Monotherapy for SARS-CoV-2 Clearance in Mice
Irfan Ullah, Fanny Escudie, Ivan Scandale, Zoela Gilani, Gabrielle Gendron-Lepage, Fleur Gaudette, Charles Mowbray, Laurent Fraisse, Renée Bazin, Andrés Finzi, Walther Mothes, Priti Kumar, Eric Chatelain, Pradeep D. Uchil
bioRxiv 2023.05.31.543159; doi: https://doi.org/10.1101/2023.05.31.543159

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