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Using normative models pre-trained on cross-sectional data to evaluate longitudinal changes in neuroimaging data

View ORCID ProfileBarbora Rehák Bučková, View ORCID ProfileCharlotte Fraza, View ORCID ProfileRastislav Rehák, View ORCID ProfileMarián Kolenič, View ORCID ProfileChristian Beckmann, View ORCID ProfileFilip Španiel, View ORCID ProfileAndre Marquand, View ORCID ProfileJaroslav Hlinka
doi: https://doi.org/10.1101/2023.06.09.544217
Barbora Rehák Bučková
1Department of Complex Systems, Institute of Computer Science of the Czech Academy of Sciences, Prague, Czech Republic
2Department of Cybernetics, Czech Technical University in Prague, Prague, Czech Republic
3National Institute of Mental Health, Klecany, Czech Republic
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Charlotte Fraza
4Donders Institute for Brain, Cognition and Behaviour, Nijmegen, Netherlands
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Rastislav Rehák
5Max Planck Institute for Research on Collective Goods, Bonn, Germany
6University of Cologne, Germany
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Marián Kolenič
3National Institute of Mental Health, Klecany, Czech Republic
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Christian Beckmann
4Donders Institute for Brain, Cognition and Behaviour, Nijmegen, Netherlands
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Filip Španiel
3National Institute of Mental Health, Klecany, Czech Republic
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Andre Marquand
4Donders Institute for Brain, Cognition and Behaviour, Nijmegen, Netherlands
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  • For correspondence: [email protected] [email protected]
Jaroslav Hlinka
1Department of Complex Systems, Institute of Computer Science of the Czech Academy of Sciences, Prague, Czech Republic
3National Institute of Mental Health, Klecany, Czech Republic
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  • For correspondence: [email protected] [email protected]
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Abstract

Longitudinal neuroimaging studies offer valuable insight into intricate dynamics of brain development, ageing, and disease progression over time. However, prevailing analytical approaches rooted in our understanding of population variation are primarily tailored for cross-sectional studies. To fully harness the potential of longitudinal neuroimaging data, we have to develop and refine methodologies that are adapted to longitudinal designs, considering the complex interplay between population variation and individual dynamics.

We build on normative modelling framework, which enables the evaluation of an individual’s position compared to a population standard. We extend this framework to evaluate an individual’s longitudinal change compared to the longitudinal change reflected by the (population) standard dynamics. Thus, we exploit the existing normative models pre-trained on over 58,000 individuals and adapt the framework so that they can also be used in the evaluation of longitudinal studies. Specifically, we introduce a quantitative metric termed “z-diff” score, which serves as an indicator of a temporal change of an individual compared to a population standard. Notably, our framework offers advantages such as flexibility in dataset size and ease of implementation.

To illustrate our approach, we applied it to a longitudinal dataset of 98 patients diagnosed with early-stage schizophrenia who underwent MRI examinations shortly after diagnosis and one year later.

Compared to cross-sectional analyses, which showed global thinning of grey matter at the first visit, our method revealed a significant normalisation of grey matter thickness in the frontal lobe over time. Furthermore, this result was not observed when using more traditional methods of longitudinal analysis, making our approach more sensitive to temporal changes.

Overall, our framework presents a flexible and effective methodology for analysing longitudinal neuroimaging data, providing insights into the progression of a disease that would otherwise be missed when using more traditional approaches.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • We improved the description of the generalised longitudinal dynamics followed by a simulation study. We further made changes in formatting to improve the flow of the theoretical part and clarifications in text where necessary based on the feedback from reviewers.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted July 29, 2024.
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Using normative models pre-trained on cross-sectional data to evaluate longitudinal changes in neuroimaging data
Barbora Rehák Bučková, Charlotte Fraza, Rastislav Rehák, Marián Kolenič, Christian Beckmann, Filip Španiel, Andre Marquand, Jaroslav Hlinka
bioRxiv 2023.06.09.544217; doi: https://doi.org/10.1101/2023.06.09.544217
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Using normative models pre-trained on cross-sectional data to evaluate longitudinal changes in neuroimaging data
Barbora Rehák Bučková, Charlotte Fraza, Rastislav Rehák, Marián Kolenič, Christian Beckmann, Filip Španiel, Andre Marquand, Jaroslav Hlinka
bioRxiv 2023.06.09.544217; doi: https://doi.org/10.1101/2023.06.09.544217

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