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Modelling Human Post-Implantation Development via Extra-Embryonic Niche Engineering

View ORCID ProfileJoshua Hislop, View ORCID ProfileAmir Alavi, Qi Song, Rayna Schoenberger, View ORCID ProfileKamyar Keshavarz F., Ryan LeGraw, View ORCID ProfileJeremy Velazquez, Tahere Mokhtari, Mohammad Nasser Taheri, Matthew Rytel, View ORCID ProfileSusana M Chuva de Sousa Lopes, Simon Watkins, Donna Stolz, View ORCID ProfileSamira Kiani, Berna Sozen, Ziv Bar-Joseph, View ORCID ProfileMo R. Ebrahimkhani
doi: https://doi.org/10.1101/2023.06.15.545118
Joshua Hislop
1Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
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  • ORCID record for Joshua Hislop
Amir Alavi
4Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
5Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
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Qi Song
4Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
5Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
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Rayna Schoenberger
1Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
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Kamyar Keshavarz F.
1Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
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Ryan LeGraw
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
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Jeremy Velazquez
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
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Tahere Mokhtari
1Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
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Mohammad Nasser Taheri
1Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
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Matthew Rytel
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
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Susana M Chuva de Sousa Lopes
8Department of Anatomy and Embryology, Leiden University Medical Center, Einthovenweg, 2333 ZC Leiden, the Netherlands
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Simon Watkins
6Center for Biologic Imaging, University of Pittsburgh, Pittsburgh, PA, USA
7Department of Cell Biology and Molecular Physiology, University of Pittsburgh, Pittsburgh, PA, USA
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Donna Stolz
6Center for Biologic Imaging, University of Pittsburgh, Pittsburgh, PA, USA
7Department of Cell Biology and Molecular Physiology, University of Pittsburgh, Pittsburgh, PA, USA
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Samira Kiani
1Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
9McGowan Institute for Regenerative Medicine, University of Pittsburgh, Pittsburgh, PA 15219, USA
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Berna Sozen
10Department of Genetics, Yale School of Medicine, Yale University, New Haven, CT, 06510, USA
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Ziv Bar-Joseph
4Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
5Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
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Mo R. Ebrahimkhani
1Department of Bioengineering, Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA
2Department of Pathology, Division of Experimental Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA
3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA 15261, USA
9McGowan Institute for Regenerative Medicine, University of Pittsburgh, Pittsburgh, PA 15219, USA
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  • ORCID record for Mo R. Ebrahimkhani
  • For correspondence: mo.ebr@pitt.edu
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Abstract

Implantation of the human embryo commences a critical developmental stage that comprises profound morphogenetic alteration of embryonic and extra-embryonic tissues, axis formation, and gastrulation events. Our mechanistic knowledge of this window of human life remains limited due to restricted access to in vivo samples for both technical and ethical reasons. Additionally, human stem cell models of early post-implantation development with both embryonic and extra-embryonic tissue morphogenesis are lacking. Here, we present iDiscoid, produced from human induced pluripotent stem cells via an engineered synthetic gene circuit. iDiscoids exhibit reciprocal co-development of human embryonic tissue and engineered extra-embryonic niche in a model of human post-implantation. They exhibit unanticipated self-organization and tissue boundary formation that recapitulates yolk sac-like tissue specification with extra-embryonic mesoderm and hematopoietic characteristics, the formation of bilaminar disc-like embryonic morphology, the development of an amniotic-like cavity, and acquisition of an anterior-like hypoblast pole and posterior-like axis. iDiscoids offer an easy-to-use, high-throughput, reproducible, and scalable platform to probe multifaceted aspects of human early post-implantation development. Thus, they have the potential to provide a tractable human model for drug testing, developmental toxicology, and disease modeling.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Modelling Human Post-Implantation Development via Extra-Embryonic Niche Engineering
Joshua Hislop, Amir Alavi, Qi Song, Rayna Schoenberger, Kamyar Keshavarz F., Ryan LeGraw, Jeremy Velazquez, Tahere Mokhtari, Mohammad Nasser Taheri, Matthew Rytel, Susana M Chuva de Sousa Lopes, Simon Watkins, Donna Stolz, Samira Kiani, Berna Sozen, Ziv Bar-Joseph, Mo R. Ebrahimkhani
bioRxiv 2023.06.15.545118; doi: https://doi.org/10.1101/2023.06.15.545118
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Modelling Human Post-Implantation Development via Extra-Embryonic Niche Engineering
Joshua Hislop, Amir Alavi, Qi Song, Rayna Schoenberger, Kamyar Keshavarz F., Ryan LeGraw, Jeremy Velazquez, Tahere Mokhtari, Mohammad Nasser Taheri, Matthew Rytel, Susana M Chuva de Sousa Lopes, Simon Watkins, Donna Stolz, Samira Kiani, Berna Sozen, Ziv Bar-Joseph, Mo R. Ebrahimkhani
bioRxiv 2023.06.15.545118; doi: https://doi.org/10.1101/2023.06.15.545118

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