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Separation-of-function mutants reveal the NF-κB-independent involvement of IκBα in the regulation of stem cell and oncogenic programs

Daniel Álvarez-Villanueva, Luis Galán-Palma, Joan Bertran, Martin Floor, Laura Solé, Teresa Lobo-Jarne, María Maqueda, Rajani Rajbhandari, Laura Marruecos, Jordi Villà-Freixa, Markus Bredel, View ORCID ProfileAnna Bigas, View ORCID ProfileLluís Espinosa
doi: https://doi.org/10.1101/2023.06.21.545928
Daniel Álvarez-Villanueva
1Cancer Research Program, Institut Mar d’Investigacions Mèdiques, CIBERONC, Hospital del Mar, Doctor Aiguader 88, Barcelona 08003, Spain
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Luis Galán-Palma
1Cancer Research Program, Institut Mar d’Investigacions Mèdiques, CIBERONC, Hospital del Mar, Doctor Aiguader 88, Barcelona 08003, Spain
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Joan Bertran
2Faculty of Sciences, Technology and Engineering, Universitat de Vic - Universitat Central de Catalunya, Vic 08500 Spain
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Martin Floor
2Faculty of Sciences, Technology and Engineering, Universitat de Vic - Universitat Central de Catalunya, Vic 08500 Spain
3Barcelona Supercomputing Center, Plaça d’Eusebi Güell, 1-3, Barcelona 08034, Spain
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Laura Solé
1Cancer Research Program, Institut Mar d’Investigacions Mèdiques, CIBERONC, Hospital del Mar, Doctor Aiguader 88, Barcelona 08003, Spain
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Teresa Lobo-Jarne
1Cancer Research Program, Institut Mar d’Investigacions Mèdiques, CIBERONC, Hospital del Mar, Doctor Aiguader 88, Barcelona 08003, Spain
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María Maqueda
1Cancer Research Program, Institut Mar d’Investigacions Mèdiques, CIBERONC, Hospital del Mar, Doctor Aiguader 88, Barcelona 08003, Spain
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Rajani Rajbhandari
4Department of Radiation Oncology, O’Neal Comprehensive Cancer Center, The University of Alabama at Birmingham School of Medicine, Birmingham, Alabama
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Laura Marruecos
1Cancer Research Program, Institut Mar d’Investigacions Mèdiques, CIBERONC, Hospital del Mar, Doctor Aiguader 88, Barcelona 08003, Spain
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Jordi Villà-Freixa
2Faculty of Sciences, Technology and Engineering, Universitat de Vic - Universitat Central de Catalunya, Vic 08500 Spain
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Markus Bredel
4Department of Radiation Oncology, O’Neal Comprehensive Cancer Center, The University of Alabama at Birmingham School of Medicine, Birmingham, Alabama
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Anna Bigas
1Cancer Research Program, Institut Mar d’Investigacions Mèdiques, CIBERONC, Hospital del Mar, Doctor Aiguader 88, Barcelona 08003, Spain
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  • ORCID record for Anna Bigas
Lluís Espinosa
1Cancer Research Program, Institut Mar d’Investigacions Mèdiques, CIBERONC, Hospital del Mar, Doctor Aiguader 88, Barcelona 08003, Spain
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  • For correspondence: [email protected]
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Abstract

We previously demonstrated that the NF-κB inhibitor IκBα binds the chromatin together with PRC2 to regulate a subset of developmental- and stem cell-related genes. This alternative function has been elusive in both physiological and disease conditions because of the predominant role of IκBα as a negative regulator of NF-κB.

We here uniquely characterize specific residues of IκBα that allow the generation of separation-of-function (SOF) mutants that are defective for either NF-κB-related (SOFΔNF-κB) or chromatin-related (SOFΔH2A,H4) activities. Expression of IκBα SOFΔNF-κB, but not SOFΔH2A/H4, is sufficient to negatively regulate a specific stemness program in intestinal cells, thus rescuing the differentiation blockage imposed by IκBα deficiency. In contrast, full IκBα activity is required for regulating clonogenic/tumor-initiating activity of colorectal cancer cells.

Our data indicate that SOF mutants represent an exclusive tool for studying IκBα functions in physiology and disease, and identified IκBα as a robust prognosis biomarker for human cancer.

Competing Interest Statement

Anna Bigas, Laura Sole and Lluis Espinosa have a submitted patent related with SOF IκBα mutants

Footnotes

  • ↵& All should be considered first authors

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted June 22, 2023.
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Separation-of-function mutants reveal the NF-κB-independent involvement of IκBα in the regulation of stem cell and oncogenic programs
Daniel Álvarez-Villanueva, Luis Galán-Palma, Joan Bertran, Martin Floor, Laura Solé, Teresa Lobo-Jarne, María Maqueda, Rajani Rajbhandari, Laura Marruecos, Jordi Villà-Freixa, Markus Bredel, Anna Bigas, Lluís Espinosa
bioRxiv 2023.06.21.545928; doi: https://doi.org/10.1101/2023.06.21.545928
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Separation-of-function mutants reveal the NF-κB-independent involvement of IκBα in the regulation of stem cell and oncogenic programs
Daniel Álvarez-Villanueva, Luis Galán-Palma, Joan Bertran, Martin Floor, Laura Solé, Teresa Lobo-Jarne, María Maqueda, Rajani Rajbhandari, Laura Marruecos, Jordi Villà-Freixa, Markus Bredel, Anna Bigas, Lluís Espinosa
bioRxiv 2023.06.21.545928; doi: https://doi.org/10.1101/2023.06.21.545928

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