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Bam complex associated proteins in Escherichia coli are functionally linked to peptidoglycan biosynthesis, membrane fluidity and DNA replication

View ORCID ProfileJack A. Bryant, Kara A. Staunton, Hannah M. Doherty, Micheal B. Alao, Xuyu Ma, Joanna Morcinek-Orłowska, Emily C. A. Goodall, Jessica Gray, Mathew Milner, Jeffrey A. Cole, Felicity de Cogan, Timothy J. Knowles, Monika Glinkowska, View ORCID ProfileDanesh Moradigaravand, Ian R. Henderson, Manuel Banzhaf
doi: https://doi.org/10.1101/2023.07.05.547807
Jack A. Bryant
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
2School of Life Sciences, University of Nottingham, Nottingham, NG7 2RD, United Kingdom,
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Kara A. Staunton
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
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Hannah M. Doherty
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
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Micheal B. Alao
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
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Xuyu Ma
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
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Joanna Morcinek-Orłowska
3Department of Biology, University of Gdańsk, 80-308 Gdańsk, Poland,
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Emily C. A. Goodall
4Institute for Molecular Bioscience, University of Queensland, St. Lucia, 4072, Australia
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Jessica Gray
4Institute for Molecular Bioscience, University of Queensland, St. Lucia, 4072, Australia
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Mathew Milner
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
5Laboratory for Infectious Disease Epidemiology, KAUST Smart-Health Initiative and Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Makkah 23955-6900, Saudi Arabia
6KAUST Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Makkah 23955-6900, Saudi Arabia
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Jeffrey A. Cole
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
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Felicity de Cogan
7School of Pharmacy, University of Nottingham, Nottingham, NG7 2RD, United Kingdom,
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Timothy J. Knowles
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
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Monika Glinkowska
3Department of Biology, University of Gdańsk, 80-308 Gdańsk, Poland,
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Danesh Moradigaravand
5Laboratory for Infectious Disease Epidemiology, KAUST Smart-Health Initiative and Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Makkah 23955-6900, Saudi Arabia
6KAUST Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Makkah 23955-6900, Saudi Arabia
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  • ORCID record for Danesh Moradigaravand
  • For correspondence: j.a.bryant@bham.ac.uk m.banzhaf@bham.ac.uk danesh.moradigaravand@kaust.edu.sa i.henderson@imb.uq.edu.au
Ian R. Henderson
4Institute for Molecular Bioscience, University of Queensland, St. Lucia, 4072, Australia
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  • For correspondence: j.a.bryant@bham.ac.uk m.banzhaf@bham.ac.uk danesh.moradigaravand@kaust.edu.sa i.henderson@imb.uq.edu.au
Manuel Banzhaf
1Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, United Kingdom,
8Newcastle University Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
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  • For correspondence: j.a.bryant@bham.ac.uk m.banzhaf@bham.ac.uk danesh.moradigaravand@kaust.edu.sa i.henderson@imb.uq.edu.au
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Abstract

Biogenesis of the bacterial outer membrane is key to survival and antibiotic resistance. Central to this is the β-barrel assembly machine (Bam) complex and its associated chaperones, which are responsible for outer membrane protein (OMP) transport and insertion. The Escherichia coli Bam complex consists of two essential subunits, BamA and BamD, and three non-essential lipoproteins, BamB, BamC and BamE. Optimal Bam function is further dependent on the non-essential chaperones DegP, Skp and SurA. Despite intensive study, the specific function of these non-essential Bam-associated proteins remains unknown. Here, we analysed knockout strains for each gene by phenotypic screening, conservation analysis and high-throughput genetics. We reveal that Bam activity is affected by outer membrane lipid composition and that enterobacterial common antigen is essential in the absence of the chaperone SurA. We also show that components of peptidoglycan are conditionally essential with Bam accessory lipoproteins and that DNA replication is perturbed in the absence of BamB. Together, our data indicates potential mechanisms for coordination of OMP biogenesis with processes such as LPS and peptidoglycan biogenesis, and DNA replication.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Bam complex associated proteins in Escherichia coli are functionally linked to peptidoglycan biosynthesis, membrane fluidity and DNA replication
Jack A. Bryant, Kara A. Staunton, Hannah M. Doherty, Micheal B. Alao, Xuyu Ma, Joanna Morcinek-Orłowska, Emily C. A. Goodall, Jessica Gray, Mathew Milner, Jeffrey A. Cole, Felicity de Cogan, Timothy J. Knowles, Monika Glinkowska, Danesh Moradigaravand, Ian R. Henderson, Manuel Banzhaf
bioRxiv 2023.07.05.547807; doi: https://doi.org/10.1101/2023.07.05.547807
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Bam complex associated proteins in Escherichia coli are functionally linked to peptidoglycan biosynthesis, membrane fluidity and DNA replication
Jack A. Bryant, Kara A. Staunton, Hannah M. Doherty, Micheal B. Alao, Xuyu Ma, Joanna Morcinek-Orłowska, Emily C. A. Goodall, Jessica Gray, Mathew Milner, Jeffrey A. Cole, Felicity de Cogan, Timothy J. Knowles, Monika Glinkowska, Danesh Moradigaravand, Ian R. Henderson, Manuel Banzhaf
bioRxiv 2023.07.05.547807; doi: https://doi.org/10.1101/2023.07.05.547807

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