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Tempo of hard and soft sweeps in subdivided populations

View ORCID ProfileVitor Sudbrack, View ORCID ProfileCharles Mullon
doi: https://doi.org/10.1101/2023.07.07.548167
Vitor Sudbrack
1Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
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Charles Mullon
1Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
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  • For correspondence: charles.mullon@unil.ch
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Abstract

The rate at which populations adapt depends on the probability and time of fixation of beneficial alleles. Both of these quantities can be significantly impacted by population subdivision and limited gene flow. However, how limited dispersal through its combined effects on the probability and time to fixation influences the rate of adaptation via hard and soft sweeps remains understudied. We investigate this here using the diffusion approximation and simulations. In contrast to previous suggestions, we find that adaptation may take on average fewer generations under limited dispersal than under panmixia. This is especially true if adaptation occurs via hard sweeps of recessive alleles, and dispersal is not too limited (such that approximately FST < 0.25). The reason is that such mildly limited dispersal leads to only a moderate increase in effective population size (which slows down fixation), but is sufficient to cause a relative excess of homozygosity due to inbreeding, thereby exposing rare recessive alleles to selection (which accelerates fixation). We also explore the effect of meta-population dynamics through local extinction followed by recolonization, finding that such dynamics always accelerate adaptation via soft sweeps, while hard sweeps exhibit faster fixation interspersed with longer waiting times. Finally, we discuss the implications of our results for the detection of sweeps, suggesting that limited dispersal mitigates the expected differences between the genetic signatures of sweeps involving recessive and dominant alleles.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted July 07, 2023.
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Tempo of hard and soft sweeps in subdivided populations
Vitor Sudbrack, Charles Mullon
bioRxiv 2023.07.07.548167; doi: https://doi.org/10.1101/2023.07.07.548167
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Tempo of hard and soft sweeps in subdivided populations
Vitor Sudbrack, Charles Mullon
bioRxiv 2023.07.07.548167; doi: https://doi.org/10.1101/2023.07.07.548167

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