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Reference genome of the ant Lasius platythorax

View ORCID ProfileBarbara Feldmeyer, View ORCID ProfileNadège Guiglielmoni, View ORCID ProfileJoseph Kirangwa, View ORCID ProfileFlorian Menzel, Judit Salces-Ortiz, View ORCID ProfileRosa Fernández, View ORCID ProfileElena Buena Atienza, View ORCID ProfileClaudio Ciofi, View ORCID ProfileMaria Angela Diroma, View ORCID ProfileAlessio Iannucci, View ORCID ProfileChiara Natali, View ORCID ProfileAnn M. Mc Cartney, View ORCID ProfileOlaf Riess, View ORCID ProfileNicolas Casadei, View ORCID ProfileAnn-Marie Waldvogel
doi: https://doi.org/10.1101/2023.07.18.549505
Barbara Feldmeyer
1Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Molecular Ecology, Frankfurt, Frankfurt, Germany
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  • For correspondence: barbara.feldmeyer@senckenberg.de
Nadège Guiglielmoni
2Institute of Zoology, Universität zu Köln, Köln, Germany
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  • ORCID record for Nadège Guiglielmoni
Joseph Kirangwa
2Institute of Zoology, Universität zu Köln, Köln, Germany
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Florian Menzel
3Institute of Organismic and Molecular Evolution, Johannes Gutenberg University Mainz, Mainz, Germany
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Judit Salces-Ortiz
4Metazoa Phylogenomics Lab, Institute of Evolutionary Biology (CSIC-University Pompeu Fabra), Barcelona, Spain
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Rosa Fernández
4Metazoa Phylogenomics Lab, Institute of Evolutionary Biology (CSIC-University Pompeu Fabra), Barcelona, Spain
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Elena Buena Atienza
5Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany
6NGS Competence Center Tübingen, Tübingen, Germany
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Claudio Ciofi
7Department of Biology, University of Florence, Sesto Fiorentino (FI), Italy
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Maria Angela Diroma
7Department of Biology, University of Florence, Sesto Fiorentino (FI), Italy
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Alessio Iannucci
7Department of Biology, University of Florence, Sesto Fiorentino (FI), Italy
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Chiara Natali
7Department of Biology, University of Florence, Sesto Fiorentino (FI), Italy
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Ann M. Mc Cartney
8Genomics Institute, University of California Santa Cruz, USA
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Olaf Riess
5Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany
6NGS Competence Center Tübingen, Tübingen, Germany
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Nicolas Casadei
5Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany
6NGS Competence Center Tübingen, Tübingen, Germany
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Ann-Marie Waldvogel
2Institute of Zoology, Universität zu Köln, Köln, Germany
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  • ORCID record for Ann-Marie Waldvogel
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Abstract

Ants are a highly diversified insect family of the order Hymenoptera, with many fascinating characteristics such as eusociality, chemical communication, farming, or social parasitism. Moreover, ants frequent a wide variety of habitats from dry deserts, grasslands and savannas to cold temperate forests. The ability of ants to inhabit such diverse habitat ranges demonstrates their adaptability and ecological resilience. However, little is known about the genetic underpinnings of this vast array of traits and their adaptive potential. Here, we generated a high-quality genome assembly for the ant species Lasius platythorax usingsing long-read PacBio HiFi in combination with chromatin conformation capture (Hi-C) sequencing. We successfully assembled the genome into 15 chromosome-level scaffolds ranging from 7.9 to 19.2 Mb and encompassing 204.6 Mb out of 235.3 Mb (total assembly), and a BUSCO score of 86% (Hymenoptera_odb10). Comparative genomics between the two sister species will provide insights into the genomic basis of trait differentiation.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted July 19, 2023.
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Reference genome of the ant Lasius platythorax
Barbara Feldmeyer, Nadège Guiglielmoni, Joseph Kirangwa, Florian Menzel, Judit Salces-Ortiz, Rosa Fernández, Elena Buena Atienza, Claudio Ciofi, Maria Angela Diroma, Alessio Iannucci, Chiara Natali, Ann M. Mc Cartney, Olaf Riess, Nicolas Casadei, Ann-Marie Waldvogel
bioRxiv 2023.07.18.549505; doi: https://doi.org/10.1101/2023.07.18.549505
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Reference genome of the ant Lasius platythorax
Barbara Feldmeyer, Nadège Guiglielmoni, Joseph Kirangwa, Florian Menzel, Judit Salces-Ortiz, Rosa Fernández, Elena Buena Atienza, Claudio Ciofi, Maria Angela Diroma, Alessio Iannucci, Chiara Natali, Ann M. Mc Cartney, Olaf Riess, Nicolas Casadei, Ann-Marie Waldvogel
bioRxiv 2023.07.18.549505; doi: https://doi.org/10.1101/2023.07.18.549505

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