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Orb2 enables rare-codon-enriched mRNA expression during Drosophila neuron differentiation

Rebeccah K Stewart, Patrick Nguyen, View ORCID ProfileAlain Laederach, Pelin C Volkan, Jessica K Sawyer, View ORCID ProfileDonald T Fox
doi: https://doi.org/10.1101/2023.07.26.550700
Rebeccah K Stewart
1Department of Pharmacology & Cancer Biology, Duke University, Durham NC
2Duke Regeneration Center, Duke University, Durham NC
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Patrick Nguyen
1Department of Pharmacology & Cancer Biology, Duke University, Durham NC
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Alain Laederach
3Department of Biology, University of North Carolina, Chapel Hill NC
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Pelin C Volkan
4Department of Biology, Duke University, Durham NC
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Jessica K Sawyer
1Department of Pharmacology & Cancer Biology, Duke University, Durham NC
2Duke Regeneration Center, Duke University, Durham NC
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Donald T Fox
1Department of Pharmacology & Cancer Biology, Duke University, Durham NC
2Duke Regeneration Center, Duke University, Durham NC
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  • ORCID record for Donald T Fox
  • For correspondence: don.fox@duke.edu
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Abstract

Regulation of codon optimality is an increasingly appreciated layer of cell- and tissue-specific protein expression control. Here, we use codon-modified reporters to show that differentiation of Drosophila neural stem cells into neurons enables protein expression from rare-codon-enriched genes. From a candidate screen, we identify the cytoplasmic polyadenylation element binding (CPEB) protein Orb2 as a positive regulator of rare-codon-dependent expression in neurons. Using RNA sequencing, we reveal that Orb2-upregulated mRNAs in the brain with abundant Orb2 binding sites have a rare-codon bias. From these Orb2-regulated mRNAs, we demonstrate that rare-codon enrichment is important for expression control and social behavior function of the metabotropic glutamate receptor (mGluR). Our findings reveal a molecular mechanism by which neural stem cell differentiation shifts genetic code regulation to enable critical mRNA and protein expression.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted July 27, 2023.
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Orb2 enables rare-codon-enriched mRNA expression during Drosophila neuron differentiation
Rebeccah K Stewart, Patrick Nguyen, Alain Laederach, Pelin C Volkan, Jessica K Sawyer, Donald T Fox
bioRxiv 2023.07.26.550700; doi: https://doi.org/10.1101/2023.07.26.550700
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Orb2 enables rare-codon-enriched mRNA expression during Drosophila neuron differentiation
Rebeccah K Stewart, Patrick Nguyen, Alain Laederach, Pelin C Volkan, Jessica K Sawyer, Donald T Fox
bioRxiv 2023.07.26.550700; doi: https://doi.org/10.1101/2023.07.26.550700

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