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Changes in coding and efficiency through modular modifications to a One Pot PURE system for in vitro transcription & translation

View ORCID ProfilePhuoc H. T. Ngo, Satoshi Ishida, Bianca B. Busogi, View ORCID ProfileHannah Do, Maximiliano A. Ledesma, Shaunak Kar, View ORCID ProfileAndrew Ellington
doi: https://doi.org/10.1101/2023.07.28.550900
Phuoc H. T. Ngo
1Department of Molecular Biosciences, College of Natural Sciences, the University of Texas at Austin, Austin, Texas 78712, United States
2Center for Systems and Synthetic Biology and Department of Chemistry, College of Natural Sciences, The University of Texas at Austin, Austin, Texas 78712, United States
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  • ORCID record for Phuoc H. T. Ngo
Satoshi Ishida
1Department of Molecular Biosciences, College of Natural Sciences, the University of Texas at Austin, Austin, Texas 78712, United States
5Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas 78712, United States
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Bianca B. Busogi
1Department of Molecular Biosciences, College of Natural Sciences, the University of Texas at Austin, Austin, Texas 78712, United States
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Hannah Do
4Department of Molecular Biosciences, College of Natural Sciences, the University of Texas at Austin, Austin, Texas 78712, United States
3Houston Methodist Research Institute, Houston, Texas 77030
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Maximiliano A. Ledesma
1Department of Molecular Biosciences, College of Natural Sciences, the University of Texas at Austin, Austin, Texas 78712, United States
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Shaunak Kar
1Department of Molecular Biosciences, College of Natural Sciences, the University of Texas at Austin, Austin, Texas 78712, United States
2Center for Systems and Synthetic Biology and Department of Chemistry, College of Natural Sciences, The University of Texas at Austin, Austin, Texas 78712, United States
3Houston Methodist Research Institute, Houston, Texas 77030
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Andrew Ellington
4Department of Molecular Biosciences, College of Natural Sciences, the University of Texas at Austin, Austin, Texas 78712, United States
5Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas 78712, United States
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  • For correspondence: elling-tonlab@gmail.com
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ABSTRACT

The incorporation of unnatural amino acids are attractive methods for improving or bringing new and novel functions in peptides and proteins. Cell-free protein synthesis using the Protein Synthesis Using Recombinant Elements (PURE) system is an attractive platform for efficient unnatural amino acid incorporation. In this work, we further adapted and modified the One Pot PURE for a robust and modular system of enzymatic single site-specific of unnatural amino acid. We demonstrated the flexibility of this system through the introduction of two orthogonal aminoacyl tRNA synthetases and the suppression of two distinctive stop codons.

Competing Interest Statement

The authors have declared no competing interest.

  • ABBREVIATIONS

    PURE
    Protein Synthesis Using Recombinant Elemtns
    CFPS
    Cell-free protein synthesis
    IVTT
    In vitro transcription and translation
    aaRS
    aminoacyl-tRNA synthetease
    ncAA
    noncanonical amino acids
    L-DOPA
    levodopa
    ProgK
    and N-ε-propagyloxycarbonyl-L-lysine
    OFP
    orange fluorescent protein
    PylRS
    pyrrolysyl-tRNA synthetase
    RF-1
    Release Factor-1
    RF-2
    Release Factor -2
    M. Barkeri
    Methanosacrina Barkeri
    M. Alvus
    Methanomethylophilus Alvus
    sfGFP
    superfolder green fluorescent protein
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    Posted July 28, 2023.
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    Changes in coding and efficiency through modular modifications to a One Pot PURE system for in vitro transcription & translation
    Phuoc H. T. Ngo, Satoshi Ishida, Bianca B. Busogi, Hannah Do, Maximiliano A. Ledesma, Shaunak Kar, Andrew Ellington
    bioRxiv 2023.07.28.550900; doi: https://doi.org/10.1101/2023.07.28.550900
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    Changes in coding and efficiency through modular modifications to a One Pot PURE system for in vitro transcription & translation
    Phuoc H. T. Ngo, Satoshi Ishida, Bianca B. Busogi, Hannah Do, Maximiliano A. Ledesma, Shaunak Kar, Andrew Ellington
    bioRxiv 2023.07.28.550900; doi: https://doi.org/10.1101/2023.07.28.550900

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