Pretrainable Geometric Graph Neural Network for Antibody Affinity Maturation

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View ORCID ProfileHuiyu Cai, Zuobai Zhang, Mingkai Wang, View ORCID ProfileBozitao Zhong, Yanling Wu, View ORCID ProfileTianlei Ying, Jian Tang

doi: https://doi.org/10.1101/2023.08.10.552845

Huiyu Cai

1BioGeometry, Office 1505, 8 Haidianbeierjie St., Beijing, 100083, China

2Mila - Québec AI Institute, 6666 St-Urbain, Montréal, H2S 3H1, Québec, Canada

3Department of Computer Science and Operations Research, Université de Montréal, 2920 chemin de la Tour, Montréal, H3T 1J4, Québec, Canada

Zuobai Zhang

2Mila - Québec AI Institute, 6666 St-Urbain, Montréal, H2S 3H1, Québec, Canada

3Department of Computer Science and Operations Research, Université de Montréal, 2920 chemin de la Tour, Montréal, H3T 1J4, Québec, Canada

Mingkai Wang

5Shanghai Engineering Research Center for Synthetic Immunology, Fudan University, 131 Dong’an Street, Shanghai, 200032, China

6School of Basic Medical Sciences, Fudan University, 138 Yixueyuan Street, Shanghai, 200031, China

Bozitao Zhong

2Mila - Québec AI Institute, 6666 St-Urbain, Montréal, H2S 3H1, Québec, Canada

3Department of Computer Science and Operations Research, Université de Montréal, 2920 chemin de la Tour, Montréal, H3T 1J4, Québec, Canada

Yanling Wu

5Shanghai Engineering Research Center for Synthetic Immunology, Fudan University, 131 Dong’an Street, Shanghai, 200032, China

6School of Basic Medical Sciences, Fudan University, 138 Yixueyuan Street, Shanghai, 200031, China

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For correspondence: yanlingwu@fudan.edu.cn tlying@fudan.edu.cn tangjian@biogeom.com

Tianlei Ying

5Shanghai Engineering Research Center for Synthetic Immunology, Fudan University, 131 Dong’an Street, Shanghai, 200032, China

6School of Basic Medical Sciences, Fudan University, 138 Yixueyuan Street, Shanghai, 200031, China

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ORCID record for Tianlei Ying
For correspondence: yanlingwu@fudan.edu.cn tlying@fudan.edu.cn tangjian@biogeom.com

Jian Tang

1BioGeometry, Office 1505, 8 Haidianbeierjie St., Beijing, 100083, China

2Mila - Québec AI Institute, 6666 St-Urbain, Montréal, H2S 3H1, Québec, Canada

4Department of Decision Sciences, HEC Montréal, 3000 chemin de la Côte-Sainte-Catherine, Montréal, H3T 2A7, Québec, Canada

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For correspondence: yanlingwu@fudan.edu.cn tlying@fudan.edu.cn tangjian@biogeom.com

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