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High-quality genome of the zoophytophagous stink bug, Nesidiocoris tenuis, informs their food habit adaptation

View ORCID ProfileTomofumi Shibata, View ORCID ProfileMasami Shimoda, View ORCID ProfileTetsuya Kobayashi, View ORCID ProfileHiroshi Arai, View ORCID ProfileYuta Owashi, View ORCID ProfileTakuya Uehara
doi: https://doi.org/10.1101/2023.08.29.555439
Tomofumi Shibata
1Division of Insect Advanced Technology, Institute of Agrobiological Sciences, NARO, Tsukuba, Ibaraki 305-8634, Japan
2Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
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  • ORCID record for Tomofumi Shibata
Masami Shimoda
2Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
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Tetsuya Kobayashi
1Division of Insect Advanced Technology, Institute of Agrobiological Sciences, NARO, Tsukuba, Ibaraki 305-8634, Japan
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Hiroshi Arai
1Division of Insect Advanced Technology, Institute of Agrobiological Sciences, NARO, Tsukuba, Ibaraki 305-8634, Japan
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Yuta Owashi
1Division of Insect Advanced Technology, Institute of Agrobiological Sciences, NARO, Tsukuba, Ibaraki 305-8634, Japan
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Takuya Uehara
1Division of Insect Advanced Technology, Institute of Agrobiological Sciences, NARO, Tsukuba, Ibaraki 305-8634, Japan
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  • For correspondence: tue@affrc.go.jp
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Abstract

The zoophytophagous stink bug, Nesidiocoris tenuis, is a promising natural enemy of micropests such as whiteflies and thrips. This bug possesses both phytophagous and entomophagous food habits, enabling it to obtain nutrition from both plants and insects. This trait allows us to maintain its population density in agricultural fields by introducing insectary plants, even when the pest prey density is extremely low. However, if the bugs’ population becomes too dense, they can sometimes damage crop plants. This dual character seems to arise from the food preferences and chemosensation of this predator. To understand the genomic landscape of N. tenuis, we examined the whole genome sequence of a commercially available Japanese strain. We used long-read sequencing and Hi-C analysis to assemble the genome at the chromosomal level. We then conducted a comparative analysis of the genome with previously reported genomes of phytophagous and hematophagous stink bugs to focus on the genetic factors contributing to this species’ herbivorous and carnivorous tendencies. Our findings suggest that the gustatory gene set plays a pivotal role in adapting to food habits, making it a promising target for selective breeding. Furthermore, we identified the whole genomes of microorganisms symbiotic with this species through genomic analysis. We believe that our results shed light on the food habit adaptations of N. tenuis and will accelerate breeding efforts based on new breeding techniques for natural enemy insects, including genomics and genome editing.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted August 31, 2023.
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High-quality genome of the zoophytophagous stink bug, Nesidiocoris tenuis, informs their food habit adaptation
Tomofumi Shibata, Masami Shimoda, Tetsuya Kobayashi, Hiroshi Arai, Yuta Owashi, Takuya Uehara
bioRxiv 2023.08.29.555439; doi: https://doi.org/10.1101/2023.08.29.555439
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High-quality genome of the zoophytophagous stink bug, Nesidiocoris tenuis, informs their food habit adaptation
Tomofumi Shibata, Masami Shimoda, Tetsuya Kobayashi, Hiroshi Arai, Yuta Owashi, Takuya Uehara
bioRxiv 2023.08.29.555439; doi: https://doi.org/10.1101/2023.08.29.555439

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