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Antigenicity and infectivity characterization of SARS-CoV-2 BA.2.86

Sijie Yang, Yuanling Yu, Fanchong Jian, Weiliang Song, Ayijiang Yisimayi, Xiaosu Chen, Yanli Xu, Peng Wang, Jing Wang, Lingling Yu, Xiao Niu, Jing Wang, Tianhe Xiao, Ran An, Yao Wang, Qingqing Gu, Fei Shao, Ronghua Jin, Zhongyang Shen, Youchun Wang, Yunlong Cao
doi: https://doi.org/10.1101/2023.09.01.555815
Sijie Yang
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P. R. China
2Peking-Tsinghua Center for Life Sciences, Tsinghua University, Beijing, P. R. China
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Yuanling Yu
3Changping Laboratory, Beijing, P. R. China
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Fanchong Jian
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P. R. China
3Changping Laboratory, Beijing, P. R. China
4College of Chemistry and Molecular Engineering, Peking University, Beijing, P. R. China
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Weiliang Song
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P. R. China
3Changping Laboratory, Beijing, P. R. China
5School of Life Sciences, Peking University, Beijing, P. R. China
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Ayijiang Yisimayi
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P. R. China
3Changping Laboratory, Beijing, P. R. China
5School of Life Sciences, Peking University, Beijing, P. R. China
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Xiaosu Chen
6Institute for Immunology, College of Life Sciences, Nankai University, Tianjin, P. R. China
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Yanli Xu
7Beijing Ditan Hospital, Capital Medical University, Beijing, P. R. China
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Peng Wang
3Changping Laboratory, Beijing, P. R. China
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Jing Wang
3Changping Laboratory, Beijing, P. R. China
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Lingling Yu
3Changping Laboratory, Beijing, P. R. China
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Xiao Niu
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P. R. China
5School of Life Sciences, Peking University, Beijing, P. R. China
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Jing Wang
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P. R. China
3Changping Laboratory, Beijing, P. R. China
5School of Life Sciences, Peking University, Beijing, P. R. China
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Tianhe Xiao
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P. R. China
8Joint Graduate Program of Peking-Tsinghua-NIBS, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, P. R. China
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Ran An
3Changping Laboratory, Beijing, P. R. China
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Yao Wang
3Changping Laboratory, Beijing, P. R. China
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Qingqing Gu
3Changping Laboratory, Beijing, P. R. China
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Fei Shao
3Changping Laboratory, Beijing, P. R. China
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Ronghua Jin
7Beijing Ditan Hospital, Capital Medical University, Beijing, P. R. China
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Zhongyang Shen
9Organ Transplant Center, NHC Key Laboratory for Critical Care Medicine, Tianjin First Central Hospital, Nankai University, Tianjin, P. R. China
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Youchun Wang
3Changping Laboratory, Beijing, P. R. China
10Institute of Medical Biotechnology, Chinese Academy of Medical Science & Peking Union Medical College, Kunming, P. R. China
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Yunlong Cao
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P. R. China
3Changping Laboratory, Beijing, P. R. China
5School of Life Sciences, Peking University, Beijing, P. R. China
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  • For correspondence: yunlongcao@pku.edu.cn
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Abstract

The recently identified SARS-CoV-2 variant, BA.2.86, which carries a substantial number of Spike mutations, has raised a global alarm. An immediate assessment of its antigenic properties and infectivity is necessary. Here, we reveal the distinct antigenicity of BA.2.86 compared with previous variants including XBB.1.5. BA.2.86 significantly evades convalescent plasma from XBB breakthrough infection (BTI) and reinfections. Key mutations that mediate the enhanced resistance include N450D, K356T, L452W, A484K, V483del, and V445H on the RBD, while BA.2.86’s NTD mutations and E554K on SD1 also largely contribute. However, we found that BA.2.86 pseudovirus exhibits compromised efficiency of infecting HEK293T-hACE2 cells compared to XBB.1.5 and EG.5, which may be caused by K356T, V483del, and E554K, and could potentially limit BA.2.86’s transmissibility. In sum, it appears that BA.2.86 has traded its infectivity for higher immune evasion during long-term host-viral evolution. Close attention should be paid to monitoring additional mutations that could improve BA.2.86’s infectivity.

Competing Interest Statement

Y.C. is the inventor of the provisional patent applications for BD series antibodies, which includes BD55-5514 (SA55). Y.C. is the founder of Singlomics Biopharmaceuticals. Other authors declare no competing interests.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted September 04, 2023.
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Antigenicity and infectivity characterization of SARS-CoV-2 BA.2.86
Sijie Yang, Yuanling Yu, Fanchong Jian, Weiliang Song, Ayijiang Yisimayi, Xiaosu Chen, Yanli Xu, Peng Wang, Jing Wang, Lingling Yu, Xiao Niu, Jing Wang, Tianhe Xiao, Ran An, Yao Wang, Qingqing Gu, Fei Shao, Ronghua Jin, Zhongyang Shen, Youchun Wang, Yunlong Cao
bioRxiv 2023.09.01.555815; doi: https://doi.org/10.1101/2023.09.01.555815
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Antigenicity and infectivity characterization of SARS-CoV-2 BA.2.86
Sijie Yang, Yuanling Yu, Fanchong Jian, Weiliang Song, Ayijiang Yisimayi, Xiaosu Chen, Yanli Xu, Peng Wang, Jing Wang, Lingling Yu, Xiao Niu, Jing Wang, Tianhe Xiao, Ran An, Yao Wang, Qingqing Gu, Fei Shao, Ronghua Jin, Zhongyang Shen, Youchun Wang, Yunlong Cao
bioRxiv 2023.09.01.555815; doi: https://doi.org/10.1101/2023.09.01.555815

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