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Autophagy adaptors mediate Parkin-dependent mitophagy by forming sheet-like liquid condensates

View ORCID ProfileZi Yang, View ORCID ProfileSaori R. Yoshii, View ORCID ProfileYuji Sakai, View ORCID ProfileHaruka Chino, View ORCID ProfileRoland L. Knorr, View ORCID ProfileNoboru Mizushima
doi: https://doi.org/10.1101/2023.09.11.557117
Zi Yang
1Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
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Saori R. Yoshii
1Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
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Yuji Sakai
1Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
2Department of Biosystems Science, Institute for Life and Medical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan
3Interdisciplinary Theoretical and Mathematical Sciences (iTHEMS) Program, RIKEN, Wako, Saitama 351-0198, Japan
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Haruka Chino
1Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
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Roland L. Knorr
1Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
4Institute of Biology, Humboldt-Universität zu Berlin, Berlin, Germany
5International Research Frontiers Initiative, Institute of Innovative Research, Tokyo Institute of Technology
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Noboru Mizushima
1Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
6International Research Center for Neurointelligence (WPI-IRCN), UTIAS, The University of Tokyo, Tokyo 113-8655, Japan
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  • For correspondence: nmizu@m.u-tokyo.ac.jp
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Abstract

During PINK1 and Parkin-mediated mitophagy, autophagy adaptors are recruited to depolarized mitochondria to promote the selective degradation of mitochondria. Autophagy adaptors such as OPTN and NDP52 bridge mitochondria and autophagosomal membranes by binding to ubiquitinated mitochondrial proteins and autophagosomal ATG8 family proteins. Here, we demonstrate that OPTN and NDP52 form sheet-like phase-separated condensates with liquid-like properties on the surface of ubiquitinated mitochondria. The dynamic and liquid-like feature of OPTN condensates is important for mitophagy activity because reducing the liquidity of OPTN–ubiquitin condensates suppresses the recruitment of ATG9 vesicles and impairs mitophagy. Based on these results, we propose a dynamic liquid-like model of autophagy adaptors, in contrast to a stoichiometric model, to explain their interactions between autophagic membranes (i.e., ATG9 vesicles and isolation membranes) and mitochondrial membranes during Parkin-mediated mitophagy. This model underscores the importance of liquid–liquid phase separation in facilitating membrane– membrane contacts, likely through the generation of capillary forces.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • As we had mistakenly cited an unrelated paper, we have replaced it with the correct one (Yamano et al. 2020).

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted September 15, 2023.
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Autophagy adaptors mediate Parkin-dependent mitophagy by forming sheet-like liquid condensates
Zi Yang, Saori R. Yoshii, Yuji Sakai, Haruka Chino, Roland L. Knorr, Noboru Mizushima
bioRxiv 2023.09.11.557117; doi: https://doi.org/10.1101/2023.09.11.557117
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Autophagy adaptors mediate Parkin-dependent mitophagy by forming sheet-like liquid condensates
Zi Yang, Saori R. Yoshii, Yuji Sakai, Haruka Chino, Roland L. Knorr, Noboru Mizushima
bioRxiv 2023.09.11.557117; doi: https://doi.org/10.1101/2023.09.11.557117

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