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The circadian clock regulates PIF3 protein stability in parallel to red light

View ORCID ProfileWei Liu, Harper Lowrey, Chun Chung Leung, Christopher Adamchek, Juan Du, Jiangman He, Meng Chen, Joshua M. Gendron
doi: https://doi.org/10.1101/2023.09.18.558326
Wei Liu
1Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA
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  • ORCID record for Wei Liu
Harper Lowrey
1Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA
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Chun Chung Leung
1Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA
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Christopher Adamchek
1Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA
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Juan Du
2Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA
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Jiangman He
2Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA
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Meng Chen
2Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA
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Joshua M. Gendron
1Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA
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  • For correspondence: joshua.gendron@yale.edu
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Abstract

The circadian clock is an endogenous oscillator, but its importance lies in its ability to impart rhythmicity on downstream biological processes or outputs. Focus has been placed on understanding the core transcription factors of the circadian clock and how they connect to outputs through regulated gene transcription. However, far less is known about posttranslational mechanisms that tether clocks to output processes through protein regulation. Here, we identify a protein degradation mechanism that tethers the clock to photomorphogenic growth. By performing a reverse genetic screen, we identify a clock-regulated F-box type E3 ubiquitin ligase, CLOCK-REGULATED F-BOX WITH A LONG HYPOCOTYL 1 (CFH1), that controls hypocotyl length. We then show that CFH1 functions in parallel to red light signaling to target the transcription factor PIF3 for degradation. This work demonstrates that the circadian clock is tethered to photomorphogenesis through the ubiquitin proteasome system and that PIF3 protein stability acts as a hub to integrate information from multiple environmental signals.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted September 18, 2023.
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The circadian clock regulates PIF3 protein stability in parallel to red light
Wei Liu, Harper Lowrey, Chun Chung Leung, Christopher Adamchek, Juan Du, Jiangman He, Meng Chen, Joshua M. Gendron
bioRxiv 2023.09.18.558326; doi: https://doi.org/10.1101/2023.09.18.558326
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The circadian clock regulates PIF3 protein stability in parallel to red light
Wei Liu, Harper Lowrey, Chun Chung Leung, Christopher Adamchek, Juan Du, Jiangman He, Meng Chen, Joshua M. Gendron
bioRxiv 2023.09.18.558326; doi: https://doi.org/10.1101/2023.09.18.558326

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