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Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses

View ORCID ProfileRebecca Earnest, View ORCID ProfileAnne M. Hahn, View ORCID ProfileNicole M. Feriancek, Matthew Brandt, Renata B. Filler, Zhe Zhao, View ORCID ProfileMallery I. Breban, View ORCID ProfileChantal B.F. Vogels, View ORCID ProfileNicholas F.G. Chen, View ORCID ProfileRobert T. Koch, Abbey J. Porzucek, View ORCID ProfileAfeez Sodeinde, Alexa Garbiel, Claire Keanna, Hannah Litwak, Heidi R. Stuber, Jamie L. Cantoni, View ORCID ProfileVirginia E. Pitzer, View ORCID ProfileXimena A. Olarte Castillo, View ORCID ProfileLaura B. Goodman, View ORCID ProfileCraig B. Wilen, Megan A. Linske, Scott C. Williams, View ORCID ProfileNathan D. Grubaugh
doi: https://doi.org/10.1101/2023.09.22.559030
Rebecca Earnest
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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  • For correspondence: earnest.rebecca@gmail.com
Anne M. Hahn
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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Nicole M. Feriancek
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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  • ORCID record for Nicole M. Feriancek
Matthew Brandt
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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Renata B. Filler
2Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT 06520, USA
3Department of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA
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Zhe Zhao
2Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT 06520, USA
3Department of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA
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Mallery I. Breban
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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  • ORCID record for Mallery I. Breban
Chantal B.F. Vogels
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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  • ORCID record for Chantal B.F. Vogels
Nicholas F.G. Chen
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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Robert T. Koch
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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Abbey J. Porzucek
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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Afeez Sodeinde
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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Alexa Garbiel
7Department of Environmental Science and Forestry, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
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Claire Keanna
7Department of Environmental Science and Forestry, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
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Hannah Litwak
7Department of Environmental Science and Forestry, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
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Heidi R. Stuber
4Department of Entomology, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
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Jamie L. Cantoni
4Department of Entomology, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
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Virginia E. Pitzer
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
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  • ORCID record for Virginia E. Pitzer
Ximena A. Olarte Castillo
5Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, NY 14853
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Laura B. Goodman
6Department of Public & Ecosystem Health, Cornell University College of Veterinary Medicine, Ithaca, NY 14853
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  • ORCID record for Laura B. Goodman
Craig B. Wilen
2Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT 06520, USA
3Department of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA
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Megan A. Linske
4Department of Entomology, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
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Scott C. Williams
7Department of Environmental Science and Forestry, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
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Nathan D. Grubaugh
1Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
8Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06510, USA
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  • ORCID record for Nathan D. Grubaugh
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Abstract

Diverse mammalian species display susceptibility to and infection with SARS-CoV-2. Potential SARS-CoV-2 spillback into rodents is understudied despite their host role for numerous zoonoses and human proximity. We assessed exposure and infection among white-footed mice (Peromyscus leucopus) in Connecticut, USA. We observed 1% (6/540) wild-type neutralizing antibody seroprevalence among 2020-2022 residential mice with no cross-neutralization of variants. We detected no SARS-CoV-2 infections via RT-qPCR, but identified non-SARS-CoV-2 betacoronavirus infections via pan-coronavirus PCR among 1% (5/468) of residential mice. Sequencing revealed two divergent betacoronaviruses, preliminarily named Peromyscus coronavirus-1 and -2. Both belong to the Betacoronavirus 1 species and are ∼90% identical to the closest known relative, Porcine hemagglutinating encephalomyelitis virus. Low SARS-CoV-2 seroprevalence suggests white-footed mice may not be sufficiently susceptible or exposed to SARS-CoV-2 to present a long-term human health risk. However, the discovery of divergent, non-SARS-CoV-2 betacoronaviruses expands the diversity of known rodent coronaviruses and further investigation is required to understand their transmission extent.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵† Co-first authors

  • ↵†† Co-senior authors

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted September 25, 2023.
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Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses
Rebecca Earnest, Anne M. Hahn, Nicole M. Feriancek, Matthew Brandt, Renata B. Filler, Zhe Zhao, Mallery I. Breban, Chantal B.F. Vogels, Nicholas F.G. Chen, Robert T. Koch, Abbey J. Porzucek, Afeez Sodeinde, Alexa Garbiel, Claire Keanna, Hannah Litwak, Heidi R. Stuber, Jamie L. Cantoni, Virginia E. Pitzer, Ximena A. Olarte Castillo, Laura B. Goodman, Craig B. Wilen, Megan A. Linske, Scott C. Williams, Nathan D. Grubaugh
bioRxiv 2023.09.22.559030; doi: https://doi.org/10.1101/2023.09.22.559030
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Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses
Rebecca Earnest, Anne M. Hahn, Nicole M. Feriancek, Matthew Brandt, Renata B. Filler, Zhe Zhao, Mallery I. Breban, Chantal B.F. Vogels, Nicholas F.G. Chen, Robert T. Koch, Abbey J. Porzucek, Afeez Sodeinde, Alexa Garbiel, Claire Keanna, Hannah Litwak, Heidi R. Stuber, Jamie L. Cantoni, Virginia E. Pitzer, Ximena A. Olarte Castillo, Laura B. Goodman, Craig B. Wilen, Megan A. Linske, Scott C. Williams, Nathan D. Grubaugh
bioRxiv 2023.09.22.559030; doi: https://doi.org/10.1101/2023.09.22.559030

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