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Spatial transcriptomics and single-nucleus RNA sequencing reveal a transcriptomic atlas of adult human spinal cord

Donghang Zhang, Yali Chen, Yiyong Wei, Hongjun Chen, Yujie Wu, Lin Wu, Jin Li, Qiyang Ren, Changhong Miao, Tao Zhu, Jin Liu, Bowen Ke, Cheng Zhou
doi: https://doi.org/10.1101/2023.09.26.559582
Donghang Zhang
1Department of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
2Laboratory of Anesthesia and Critical Care Medicine, National-Local Joint Engineering Research Centre of Translational Medicine of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
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Yali Chen
1Department of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
2Laboratory of Anesthesia and Critical Care Medicine, National-Local Joint Engineering Research Centre of Translational Medicine of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
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Yiyong Wei
3Department of Anesthesiology, Longgang District Maternity & Child Healthcare Hospital of Shenzhen City (Longgang Maternity and Child Institute of Shantou University Medical College); Shenzhen, 518100, China
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Hongjun Chen
4Department of Intensive Care Unit, Affiliated Hospital of Zunyi Medical University; Zunyi, 563003, China
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Yujie Wu
1Department of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
2Laboratory of Anesthesia and Critical Care Medicine, National-Local Joint Engineering Research Centre of Translational Medicine of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
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Lin Wu
1Department of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
2Laboratory of Anesthesia and Critical Care Medicine, National-Local Joint Engineering Research Centre of Translational Medicine of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
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Jin Li
5Department of Orthopedic Surgery, Affiliated Hospital of Zunyi Medical University; Zunyi, 563003, China
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Qiyang Ren
6Department of Anesthesiology, Affiliated Hospital of Zunyi Medical University; Zunyi, 563003, China
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Changhong Miao
7Department of Anesthesiology, Zhongshan Hospital, Fudan University; Shanghai, 200030, China
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Tao Zhu
1Department of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
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Jin Liu
1Department of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
2Laboratory of Anesthesia and Critical Care Medicine, National-Local Joint Engineering Research Centre of Translational Medicine of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
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  • For correspondence: [email protected] [email protected] [email protected]
Bowen Ke
2Laboratory of Anesthesia and Critical Care Medicine, National-Local Joint Engineering Research Centre of Translational Medicine of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
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  • For correspondence: [email protected] [email protected] [email protected]
Cheng Zhou
2Laboratory of Anesthesia and Critical Care Medicine, National-Local Joint Engineering Research Centre of Translational Medicine of Anesthesiology, West China Hospital, Sichuan University; Chengdu, 610041, China
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  • For correspondence: [email protected] [email protected] [email protected]
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Abstract

Despite the recognized importance of the spinal cord in sensory processing, motor behaviors, and neural diseases, the underlying organization of neuronal clusters and their spatial location remain elusive. Recently, several studies have attempted to define the neuronal types and functional heterogeneity in the spinal cord using single-cell or single-nucleus RNA sequencing in animal models or developing humans. However, molecular evidence of cellular heterogeneity in the adult human spinal cord is limited. Here, we classified spinal cord neurons into 21 subclusters and determined their distribution from nine human donors using single-nucleus RNA sequencing and spatial transcriptomics. Moreover, we compared the human findings with previously published single-nucleus data of the mouse adult spinal cord, which revealed an overall similarity in the neuronal composition of the spinal cord between the two species while simultaneously highlighting some degree of heterogeneity. Additionally, we examined the sex differences in the spinal neuronal subclusters. Several genes, such as SCN10A and HCN1, showed sex differences in motor neurons. Finally, we classified human dorsal root ganglia (DRG) neurons using spatial transcriptomics and explored the putative interactions between DRG and spinal cord neuronal subclusters. In summary, these results illustrate the complexity and diversity of spinal neurons in humans and provide an important resource for future research to explore the molecular mechanisms underlying spinal cord physiology and diseases.

Competing Interest Statement

The authors have declared no competing interest.

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Posted September 27, 2023.
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Spatial transcriptomics and single-nucleus RNA sequencing reveal a transcriptomic atlas of adult human spinal cord
Donghang Zhang, Yali Chen, Yiyong Wei, Hongjun Chen, Yujie Wu, Lin Wu, Jin Li, Qiyang Ren, Changhong Miao, Tao Zhu, Jin Liu, Bowen Ke, Cheng Zhou
bioRxiv 2023.09.26.559582; doi: https://doi.org/10.1101/2023.09.26.559582
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Spatial transcriptomics and single-nucleus RNA sequencing reveal a transcriptomic atlas of adult human spinal cord
Donghang Zhang, Yali Chen, Yiyong Wei, Hongjun Chen, Yujie Wu, Lin Wu, Jin Li, Qiyang Ren, Changhong Miao, Tao Zhu, Jin Liu, Bowen Ke, Cheng Zhou
bioRxiv 2023.09.26.559582; doi: https://doi.org/10.1101/2023.09.26.559582

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