HybriSeq: Probe-based Device-free Single-cell RNA Profiling

Daniel Foyt; David Brown; Shuqin Zhou; Bo Huang

doi:10.1101/2023.09.27.559406

ABSTRACT

We have developed the HybriSeq method for single-cell RNA profiling, which utilizes in situ hybridization of multiple probes for targeted transcripts, followed by split-pool barcoding and sequencing analysis of the probes. We have shown that HybriSeq can achieve high sensitivity for RNA detection with multiple probes and profile RNA accessibility. The utility of HybriSeq is demonstrated in characterizing cell-to-cell heterogeneities of a panel of 95 cell-cycle-related genes and the probe-probe heterogeneity within a single transcript.

Competing Interest Statement

The authors have declared no competing interest.

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