ABSTRACT
Background The airway epithelium plays a central role in the pathogenesis of chronic respiratory diseases such as asthma and chronic rhinosinusitis with nasal polyps (CRSwNP), but the mechanisms by which airway epithelial cells (EpCs) maintain inflammation are poorly understood.
Objective We hypothesized that transcriptomic assessment of sorted airway EpCs across the spectrum of differentiation would allow us to define mechanisms by which EpCs perpetuate airway inflammation.
Methods Ethmoid sinus EpCs from adult patients with CRS were sorted into 3 subsets, bulk RNA sequenced, and analyzed for differentially expressed genes and pathways. Single cell RNA-seq (scRNA-seq) datasets from eosinophilic and non-eosinophilic CRSwNP and bulk RNA-seq of EpCs from mild/moderate and severe asthma were assessed. Immunofluorescent staining and ex vivo functional analysis of sinus EpCs were used to validate our findings.
Results Analysis within and across purified EpC subsets revealed an enrichment in glycolytic programming in CRSwNP vs CRSsNP. Correlation analysis identified mammalian target of rapamycin complex 1 (mTORC1) as a potential regulator of the glycolytic program and identified EpC expression of cytokines and wound healing genes as potential sequelae. mTORC1 activity was upregulated in CRSwNP, and ex vivo inhibition demonstrated that mTOR is critical for EpC generation of CXCL8, IL-33, and CXCL2. Across patient samples, the degree of glycolytic activity was associated with T2 inflammation in CRSwNP, and with both T2 and non-T2 inflammation in severe asthma.
Conclusions Together, these findings highlight a metabolic axis required to support epithelial generation of cytokines critical to both chronic T2 and non-T2 inflammation in CRSwNP and asthma.
KEY MESSAGES
Epithelial mTORC1 activity is upregulated in CRSwNP.
mTOR regulates EpC cytokine generation.
Epithelial metabolic reprograming correlates with T2 inflammation in CRSwNP, and with both T2 and non-T2 inflammation in asthma.
CAPSULE SUMMARY mTORC1 mediates EpC cytokine generation in CRSwNP.
Competing Interest Statement
Conflict of Interest Statement: JAB has served on scientific advisory boards for Siolta Therapeutics, Third Harmonic Bio, Sanofi/Aventis. NAB has served on scientific advisory boards for Regeneron. KMB has served on scientific advisory boards for AstraZeneca, Regeneron, Sanofi and GlaxoSmithKline. TML has served on scientific advisory boards for Regeneron, Sanofi, Eli Lilly, and GlaxoSmithKline. JEG has served as a consultant for AstraZeneca. The rest of the authors declare that they have no relevant conflicts of interest.
Footnotes
Funding: This work was supported by National Institutes of Health grants U19AI095219 (JAB, NAB, TML, SR, MGA), R01AI134989 (NAB), R01HL120952 (NAB), T32AI007306 (supporting GXH), T32GM132089 (supporting MVM), K23 AI139352 (KMB), P01 AI106684 (SEW), and by the generous support of the Vinik family and Kaye innovation fund.
Conflict of Interest Statement: JAB has served on scientific advisory boards for Siolta Therapeutics, Third Harmonic Bio, Sanofi/Aventis. NAB has served on scientific advisory boards for Regeneron. KMB has served on scientific advisory boards for AstraZeneca, Regeneron, Sanofi and GlaxoSmithKline. TML has served on scientific advisory boards for Regeneron, Sanofi, Eli Lilly, and GlaxoSmithKline. JEG has served as a consultant for AstraZeneca. The rest of the authors declare that they have no relevant conflicts of interest.
Abbreviations
- T2
- type 2
- T2I
- inflammation
- CRSwNP
- chronic rhinosinusitis with nasal polyps
- CRSsNP
- chronic rhinosinusitis without nasal polyps
- AERD
- aspirin-exacerbated respiratory disease
- EpCs
- epithelial cells
- IL-4
- interleukin-4
- IL-13
- interleukin-13
- RNA-seq
- RNA-sequencing
- scRNA-seq
- single cell RNA-sequencing
- DE
- differential expression
- DEGs
- differentially expressed genes
- BCAM
- basal cell adhesion molecule
- KRT5
- keratin 5
- TP63
- tumor protein 63
- NGFR
- nerve growth factor receptor
- EpCAM
- epithelial cell adhesion molecule
- SCGB1A1
- secretoglobin family 1A
- MUC5AC
- mucin 5AC
- IRS
- insulin receptor substrate
- mTOR
- mammalian target of rapamycin
- mTORC
- mTOR complex
- ILC
- innate lymphoid cell
- IRS
- insulin receptor substrate
- HIF-1α
- hypoxia-inducible factor 1α
- EMT
- epithelial-mesenchymal transition