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MET variants with activating N-lobe mutations identified in hereditary papillary renal cell carcinomas still require ligand stimulation

View ORCID ProfileCélia Guérin, Audrey Vinchent, Marie Fernandes, Isabelle Damour, Agathe Laratte, Rémi Tellier, View ORCID ProfileGabriella O. Estevam, Jean-Pascal Meneboo, Céline Villenet, Clotilde Descarpentries, View ORCID ProfileJames S. Fraser, Martin Figeac, Alexis B Cortot, Etienne Rouleau, David Tulasne
doi: https://doi.org/10.1101/2023.11.03.565283
Célia Guérin
1Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR9020 – UMR1277 - Canther – Cancer Heterogeneity, Plasticity and Resistance to Therapies, F-59000 Lille, France
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  • ORCID record for Célia Guérin
Audrey Vinchent
1Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR9020 – UMR1277 - Canther – Cancer Heterogeneity, Plasticity and Resistance to Therapies, F-59000 Lille, France
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Marie Fernandes
1Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR9020 – UMR1277 - Canther – Cancer Heterogeneity, Plasticity and Resistance to Therapies, F-59000 Lille, France
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Isabelle Damour
1Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR9020 – UMR1277 - Canther – Cancer Heterogeneity, Plasticity and Resistance to Therapies, F-59000 Lille, France
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Agathe Laratte
1Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR9020 – UMR1277 - Canther – Cancer Heterogeneity, Plasticity and Resistance to Therapies, F-59000 Lille, France
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Rémi Tellier
1Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR9020 – UMR1277 - Canther – Cancer Heterogeneity, Plasticity and Resistance to Therapies, F-59000 Lille, France
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Gabriella O. Estevam
2Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States
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  • ORCID record for Gabriella O. Estevam
Jean-Pascal Meneboo
3Univ. Lille, Plateau de génomique fonctionnelle et structurale, CHU Lille, F-59000 Lille, France
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Céline Villenet
3Univ. Lille, Plateau de génomique fonctionnelle et structurale, CHU Lille, F-59000 Lille, France
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Clotilde Descarpentries
4Department of Biochemistry and Molecular Biology « Hormonology Metabolism Nutrition Oncology », CHU lille, F-59000, Lille, France, CHU Lille, Lille, France
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James S. Fraser
2Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States
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Martin Figeac
3Univ. Lille, Plateau de génomique fonctionnelle et structurale, CHU Lille, F-59000 Lille, France
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Alexis B Cortot
1Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR9020 – UMR1277 - Canther – Cancer Heterogeneity, Plasticity and Resistance to Therapies, F-59000 Lille, France
6Univ. Lille, Thoracic Oncology Department, CHU Lille, F-59000, France
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Etienne Rouleau
5Department of Medical Biology and Pathology, Cancer Genetics Laboratory, Gustave Roussy, Villejuif, France
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David Tulasne
1Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR9020 – UMR1277 - Canther – Cancer Heterogeneity, Plasticity and Resistance to Therapies, F-59000 Lille, France
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  • For correspondence: [email protected]
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Abstract

In hereditary papillary renal cell carcinoma (HPRCC), the MET receptor tyrosine kinase (RTK) mutations recorded to date are located in the kinase domain and lead to constitutive MET activation. This contrasts with MET mutations recently identified in non-small cell lung cancer (NSCLC), which lead to exon 14 skipping and deletion of a regulatory domain: in this latter case, the mutated receptor still requires ligand stimulation. Sequencing of MET in samples from 158 HPRCC and 2808 NSCLC patients revealed ten uncharacterized mutations. Four of these, all found in HPRCC and leading to amino acid substitutions in the N-lobe of the MET kinase, proved able to induce cell transformation, further enhanced by HGF stimulation: His1086Leu, Ile1102Thr, Leu1130Ser, and Cis1125Gly. Similar to the variant resulting in MET exon14 skipping, the two N-lobe MET variants His1086Leu, Ile1102Thr further characterized were found to require stimulation by HGF in order to strongly activate downstream signaling pathways and epithelial cell motility. The Ile1102Thr mutation displayed also transforming potential, promoting tumor growth in a xenograft model. In addition, the N-lobe-mutated MET variants were found to trigger a common HGF-stimulation-dependent transcriptional program, consistent with an observed increase in cell motility and invasion. Altogether, this functional characterization revealed that N-lobe variants still require ligand stimulation, in contrast to other RTK variants. This suggests that HGF expression in the tumor microenvironment is important for tumor growth. The sensitivity of these variants to MET TKIs opens the way for use of targeted therapies for patients harboring the corresponding mutations.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Conflict of interest: The authors declare that there is no conflict of interest regarding the publication of this article

  • Financial Support: This work was supported by the CNRS, INSERM, the Pasteur Institute of Lille and the University of Lille, and by grants from the “Agence Nationale de la recherche”, “Cancéropôle Nord-Ouest”, the “Ligue Contre le Cancer, Comités Nord et Aisne” the “SIRIC ONCOLille” and the “Institut National du Cancer”. Canther laboratory is part of ONCOLille institute. This work is supported by a grant from Contrat de Plan Etat-Région CPER Cancer 2015-2020. The JSF work is supported by NIH CA239604.

  • Abbreviations: EGFR: epidermal growth factor receptor; HGF: hepatocyte growth factor; HPRCC: hereditary papillary renal cell carcinoma; MMP: Matrix matallo-proteases; NSCLC: non-small cell lung cancer; PRCC: Papillary renal cell carcinoma; RCC: renal cell carcinomas; RTK: tyrosine kinase receptor; TKI: tyrosine kinase inhibitors

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 07, 2023.
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MET variants with activating N-lobe mutations identified in hereditary papillary renal cell carcinomas still require ligand stimulation
Célia Guérin, Audrey Vinchent, Marie Fernandes, Isabelle Damour, Agathe Laratte, Rémi Tellier, Gabriella O. Estevam, Jean-Pascal Meneboo, Céline Villenet, Clotilde Descarpentries, James S. Fraser, Martin Figeac, Alexis B Cortot, Etienne Rouleau, David Tulasne
bioRxiv 2023.11.03.565283; doi: https://doi.org/10.1101/2023.11.03.565283
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MET variants with activating N-lobe mutations identified in hereditary papillary renal cell carcinomas still require ligand stimulation
Célia Guérin, Audrey Vinchent, Marie Fernandes, Isabelle Damour, Agathe Laratte, Rémi Tellier, Gabriella O. Estevam, Jean-Pascal Meneboo, Céline Villenet, Clotilde Descarpentries, James S. Fraser, Martin Figeac, Alexis B Cortot, Etienne Rouleau, David Tulasne
bioRxiv 2023.11.03.565283; doi: https://doi.org/10.1101/2023.11.03.565283

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