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Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing

View ORCID ProfileSegewkal Heruye, View ORCID ProfileJered Myslinski, View ORCID ProfileChao Zeng, Amy Zollman, Shinichi Makino, View ORCID ProfileAzuma Nanamatsu, View ORCID ProfileQuoseena Mir, View ORCID ProfileSarath Chandra Janga, Emma H Doud, View ORCID ProfileMichael T Eadon, Bernhard Maier, View ORCID ProfileMichiaki Hamada, View ORCID ProfileTuan M Tran, View ORCID ProfilePierre C Dagher, View ORCID ProfileTakashi Hato
doi: https://doi.org/10.1101/2023.11.09.566426
Segewkal Heruye
1Department of Medicine, Indiana University School of Medicine
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Jered Myslinski
1Department of Medicine, Indiana University School of Medicine
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Chao Zeng
2Faculty of Science and Engineering, Waseda University, Tokyo
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Amy Zollman
1Department of Medicine, Indiana University School of Medicine
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Shinichi Makino
1Department of Medicine, Indiana University School of Medicine
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Azuma Nanamatsu
1Department of Medicine, Indiana University School of Medicine
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Quoseena Mir
3Luddy School of Informatics, Computing, and Engineering, Indiana University
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Sarath Chandra Janga
3Luddy School of Informatics, Computing, and Engineering, Indiana University
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Emma H Doud
4Department of Biochemistry and Molecular Biology, Indiana University School of Medicine
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Michael T Eadon
1Department of Medicine, Indiana University School of Medicine
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Bernhard Maier
1Department of Medicine, Indiana University School of Medicine
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Michiaki Hamada
2Faculty of Science and Engineering, Waseda University, Tokyo
5AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory, National Institute of Advanced Industrial Science and Technology, Tokyo
6Graduate School of Medicine, Nippon Medical School, Tokyo
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Tuan M Tran
1Department of Medicine, Indiana University School of Medicine
7Richard L. Roudebush Veterans Affairs Medical Center, Indianapolis
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Pierre C Dagher
1Department of Medicine, Indiana University School of Medicine
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Takashi Hato
1Department of Medicine, Indiana University School of Medicine
7Richard L. Roudebush Veterans Affairs Medical Center, Indianapolis
8Department of Medical and Molecular Genetics, Indiana University School of Medicine
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  • For correspondence: thato@iu.edu
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Abstract

The progression of kidney disease varies among individuals, but a general methodology to quantify disease timelines is lacking. Particularly challenging is the task of determining the potential for recovery from acute kidney injury following various insults. Here, we report that quantitation of post-transcriptional adenosine-to-inosine (A-to-I) RNA editing offers a distinct genome-wide signature, enabling the delineation of disease trajectories in the kidney. A well-defined murine model of endotoxemia permitted the identification of the origin and extent of A-to-I editing, along with temporally discrete signatures of double-stranded RNA stress and Adenosine Deaminase isoform switching. We found that A-to-I editing of Antizyme Inhibitor 1 (AZIN1), a positive regulator of polyamine biosynthesis, serves as a particularly useful temporal landmark during endotoxemia. Our data indicate that AZIN1 A-to-I editing, triggered by preceding inflammation, primes the kidney and activates endogenous recovery mechanisms. By comparing genetically modified human cell lines and mice locked in either A-to-I edited or uneditable states, we uncovered that AZIN1 A-to-I editing not only enhances polyamine biosynthesis but also engages glycolysis and nicotinamide biosynthesis to drive the recovery phenotype. Our findings implicate that quantifying AZIN1 A-to-I editing could potentially identify individuals who have transitioned to an endogenous recovery phase. This phase would reflect their past inflammation and indicate their potential for future recovery.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Conflict of interest: The authors have declared that no conflict of interest exists.

  • Support: NIH R01-AI148282, NIH R01-DK107623, U01DK114923, Veterans Affairs Merit BX002901

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 09, 2023.
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Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing
Segewkal Heruye, Jered Myslinski, Chao Zeng, Amy Zollman, Shinichi Makino, Azuma Nanamatsu, Quoseena Mir, Sarath Chandra Janga, Emma H Doud, Michael T Eadon, Bernhard Maier, Michiaki Hamada, Tuan M Tran, Pierre C Dagher, Takashi Hato
bioRxiv 2023.11.09.566426; doi: https://doi.org/10.1101/2023.11.09.566426
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Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing
Segewkal Heruye, Jered Myslinski, Chao Zeng, Amy Zollman, Shinichi Makino, Azuma Nanamatsu, Quoseena Mir, Sarath Chandra Janga, Emma H Doud, Michael T Eadon, Bernhard Maier, Michiaki Hamada, Tuan M Tran, Pierre C Dagher, Takashi Hato
bioRxiv 2023.11.09.566426; doi: https://doi.org/10.1101/2023.11.09.566426

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