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Designer antisense circRNAGFP reduces GFP protein abundance in transgenic Arabidopsis protoplasts in a sequence-specific manner, independent of RNAi pathways

View ORCID ProfileM Hossain, View ORCID ProfileC Pfafenrot, View ORCID ProfileJ Imani, View ORCID ProfileE Šečić, View ORCID ProfileA Sede, View ORCID ProfileM Galli, View ORCID ProfileM Heinlein, View ORCID ProfileA Bindereif, View ORCID ProfileM Ladera-Carmona, View ORCID ProfileKH Kogel
doi: https://doi.org/10.1101/2023.11.20.567890
M Hossain
1Institute of Phytopathology, Centre for BioSystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26, D-35392, Giessen, Germany
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C Pfafenrot
2Institute of Biochemistry, Heinrich-Buff-Ring 17, Justus Liebig University, D-35392 Giessen, Germany
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J Imani
1Institute of Phytopathology, Centre for BioSystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26, D-35392, Giessen, Germany
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E Šečić
1Institute of Phytopathology, Centre for BioSystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26, D-35392, Giessen, Germany
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A Sede
3Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, 12 rue du Général Zimmer, 67084 Strasbourg, France
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M Galli
1Institute of Phytopathology, Centre for BioSystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26, D-35392, Giessen, Germany
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M Heinlein
3Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, 12 rue du Général Zimmer, 67084 Strasbourg, France
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A Bindereif
2Institute of Biochemistry, Heinrich-Buff-Ring 17, Justus Liebig University, D-35392 Giessen, Germany
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M Ladera-Carmona
1Institute of Phytopathology, Centre for BioSystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26, D-35392, Giessen, Germany
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KH Kogel
1Institute of Phytopathology, Centre for BioSystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26, D-35392, Giessen, Germany
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  • For correspondence: karl-heinz.kogel@agrar.uni-giessen.de
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Abstract

Circular RNAs (circRNAs) are single-stranded molecules that have attracted increasing attention in recent years due to their covalently closed structure and their diverse functional roles in mammalian cells, where they are involved in the regulation of gene expression and protein function. Increasing evidence suggests that circRNAs have similar functions in plants, where they play a role in plant development, resistance to biotic stress, and abiotic stress tolerance. Here, we investigated the agronomically relevant question of whether synthetic designer circRNAs can be used to modulate in a sequence-specific manner gene expression in plants. We show that treatment of GFP-expressing Arabidopsis protoplasts with designer 50 nt GFP antisense circRNA (circRNAGFP) reduces the cellular accumulation of the reporter protein in a sequence-specific and dose-dependent manner. This inhibitory activity of circRNAGFP was not abolished in various Arabidopsis ago and dcl mutants with defective RNAi pathways. Moreover, and in contrast to other types of RNA such as double-stranded (ds)RNA, circRNAs did not induce a PTI response in plant leaves. We discuss the possibility that circRNA may be applied to regulate endogenous plant genes and thus may have future potential as a novel bioherbicide.

Competing Interest Statement

The authors have declared no competing interest.

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Posted November 20, 2023.
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Designer antisense circRNAGFP reduces GFP protein abundance in transgenic Arabidopsis protoplasts in a sequence-specific manner, independent of RNAi pathways
M Hossain, C Pfafenrot, J Imani, E Šečić, A Sede, M Galli, M Heinlein, A Bindereif, M Ladera-Carmona, KH Kogel
bioRxiv 2023.11.20.567890; doi: https://doi.org/10.1101/2023.11.20.567890
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Designer antisense circRNAGFP reduces GFP protein abundance in transgenic Arabidopsis protoplasts in a sequence-specific manner, independent of RNAi pathways
M Hossain, C Pfafenrot, J Imani, E Šečić, A Sede, M Galli, M Heinlein, A Bindereif, M Ladera-Carmona, KH Kogel
bioRxiv 2023.11.20.567890; doi: https://doi.org/10.1101/2023.11.20.567890

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