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Serine hydroxymethyl transferase is a binding target of caprylic acid: Uncovering a novel molecular target for a herbicide and for producing caprylic acid-tolerant crops

Zuren Li, Mugui Wang, Haodong Bai, Hongzhi Wang, Jincai Han, Likun An, Dingfeng Luo, Yingying Wang, Wei Kuang, Xiaoyi Nie, Lianyang Bai
doi: https://doi.org/10.1101/2023.12.12.571245
Zuren Li
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Mugui Wang
2Shanghai Center for Plant Stress Biology and Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 201602, China
3Institute of Crop Sciences/National Nanfan Research Institute, Chinese Academy of Agricultural Sciences (CAAS), and Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Sanya 572024, China
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Haodong Bai
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Hongzhi Wang
2Shanghai Center for Plant Stress Biology and Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 201602, China
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Jincai Han
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Likun An
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Dingfeng Luo
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Yingying Wang
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Wei Kuang
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Xiaoyi Nie
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Lianyang Bai
1State Key Laboratory of Hybrid Rice, Hunan Academy of Agricultural Sciences, Changsha 410125, China
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Abstract

Identification of new binding targets is essential for the development of herbicides and phytotoxin-tolerant crops. Caprylic acid (CAP) is a safe and non-selective bio-herbicide in uncultivated areas. However, the herbicidal action of CAP remains unclear. Herein, metabolomic and proteomic profiling indicated that a serine hydroxymethyl transferase in Conyza canadensis (CcSHMT1) is a promising candidate binding targeted for CAP. The protein abundance and activity of CcSHMT1 were decreased in a time- and dosage-dependent manners after CAP treatment. CAP competes with phenyl-serine at the binding sites, decreasing the enzymatic activity of CcSHMT1. Overexpression of CcSHMT1, AtSHMT1 and OsSHMT1 in Arabidopsis or rice endowed plants with high tolerance to CAP treatment, whereas the knockout of osshmt1 led to death of plants under normal atmospheric conditions. Furthermore, T194A, T194A/ M195V and D209N Osshmt1 mutant plants derived from base editing exhibited tolerance to CAP. CAP bound to CcSHMT1 with high affinity, and Ala191 in the key domains of N-terminus was identified to be critical for the binding site of CAP. Collectively, our findings demonstrate that CcSHMT1 is a binding target for herbicidal activity of CAP. This study marks a key step in the druggability of SHMT inhibitors and represents an attractive target for phytotoxin-tolerant crops.

Competing Interest Statement

The authors have declared no competing interest.

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Posted December 13, 2023.
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Serine hydroxymethyl transferase is a binding target of caprylic acid: Uncovering a novel molecular target for a herbicide and for producing caprylic acid-tolerant crops
Zuren Li, Mugui Wang, Haodong Bai, Hongzhi Wang, Jincai Han, Likun An, Dingfeng Luo, Yingying Wang, Wei Kuang, Xiaoyi Nie, Lianyang Bai
bioRxiv 2023.12.12.571245; doi: https://doi.org/10.1101/2023.12.12.571245
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Serine hydroxymethyl transferase is a binding target of caprylic acid: Uncovering a novel molecular target for a herbicide and for producing caprylic acid-tolerant crops
Zuren Li, Mugui Wang, Haodong Bai, Hongzhi Wang, Jincai Han, Likun An, Dingfeng Luo, Yingying Wang, Wei Kuang, Xiaoyi Nie, Lianyang Bai
bioRxiv 2023.12.12.571245; doi: https://doi.org/10.1101/2023.12.12.571245

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