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Kinases in motion: impact of protein and small molecule interactions on kinase conformations

View ORCID ProfileValentina Kugler, View ORCID ProfileSelina Schwaighofer, Andreas Feichtner, Florian Enzler, Jakob Fleischmann, Sophie Strich, Sarah Schwarz, Rebecca Wilson, Philipp Tschaikner, Jakob Troppmair, Veronika Sexl, Pascal Meier, View ORCID ProfileTeresa Kaserer, Eduard Stefan
doi: https://doi.org/10.1101/2024.01.11.575270
Valentina Kugler
1Institute for Molecular Biology and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
2Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria
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  • ORCID record for Valentina Kugler
Selina Schwaighofer
1Institute for Molecular Biology and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
2Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria
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  • ORCID record for Selina Schwaighofer
Andreas Feichtner
1Institute for Molecular Biology and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
2Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria
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Florian Enzler
3Daniel Swarovski Research Laboratory, Department of Visceral, Transplant and Thoracic Surgery, Medical University of Innsbruck, Austria
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Jakob Fleischmann
1Institute for Molecular Biology and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
2Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria
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Sophie Strich
1Institute for Molecular Biology and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
2Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria
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Sarah Schwarz
2Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria
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Rebecca Wilson
4The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London, UK
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Philipp Tschaikner
2Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria
5KinCon biolabs GmbH, Innsbruck, Austria
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Jakob Troppmair
3Daniel Swarovski Research Laboratory, Department of Visceral, Transplant and Thoracic Surgery, Medical University of Innsbruck, Austria
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Veronika Sexl
6University of Innsbruck, Innsbruck, Austria
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Pascal Meier
4The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London, UK
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Teresa Kaserer
7Institute of Pharmacy/Pharmaceutical Chemistry and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
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Eduard Stefan
1Institute for Molecular Biology and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
2Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria
5KinCon biolabs GmbH, Innsbruck, Austria
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  • For correspondence: [email protected]
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Abstract

Protein kinases act as central molecular switches in the control of cellular functions. Alterations in the regulation and function of protein kinases may provoke diseases including cancer. In this study we investigate the conformational states of such disease-associated kinases using the high sensitivity of the Kinase Conformation (KinCon)-reporter system. We first track BRAF-kinase activity conformation changes upon melanoma drug binding. Second, we also use the KinCon reporter technology to examine the impact of regulatory protein interactions on LKB1-kinase tumor suppressor functions. Third, we explore the conformational dynamics of RIP-kinases in response to TNF-pathway activation and small molecule interactions. Finally, we show that CDK4/6 interactions with regulatory proteins alter conformations which remain unaffected in the presence of clinically applied inhibitors. Apart from its predictive value, the KinCon technology helps to identify cellular factors that impact drug efficacies. The understanding of the structural dynamics of full-length protein kinases when interacting with small molecule inhibitors or regulatory proteins is crucial for designing more effective therapeutic strategies.

Competing Interest Statement

E.S and P.T. are co-founders of KinCon biolabs

Footnotes

  • all notes of the two editors were integrated; Streamlining of the manuscript; repetitive passages were removed; representation of Figures (labeling and font size); Supplemental files added;

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted May 08, 2024.
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Kinases in motion: impact of protein and small molecule interactions on kinase conformations
Valentina Kugler, Selina Schwaighofer, Andreas Feichtner, Florian Enzler, Jakob Fleischmann, Sophie Strich, Sarah Schwarz, Rebecca Wilson, Philipp Tschaikner, Jakob Troppmair, Veronika Sexl, Pascal Meier, Teresa Kaserer, Eduard Stefan
bioRxiv 2024.01.11.575270; doi: https://doi.org/10.1101/2024.01.11.575270
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Kinases in motion: impact of protein and small molecule interactions on kinase conformations
Valentina Kugler, Selina Schwaighofer, Andreas Feichtner, Florian Enzler, Jakob Fleischmann, Sophie Strich, Sarah Schwarz, Rebecca Wilson, Philipp Tschaikner, Jakob Troppmair, Veronika Sexl, Pascal Meier, Teresa Kaserer, Eduard Stefan
bioRxiv 2024.01.11.575270; doi: https://doi.org/10.1101/2024.01.11.575270

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