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Elucidating ATP’s Role as Solubilizer of Biomolecular Aggregate

Susmita Sarkar, Saurabh Gupta, Chiranjit Mahato, Dibyendu Das, Jagannath Mondal
doi: https://doi.org/10.1101/2024.01.15.575740
Susmita Sarkar
1Tata Institute of Fundamental Research Hyderabad, Telangana, India, 500046
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Saurabh Gupta
2Indian Institute of Science Education and Research, Kolkata, Campus Rd, Mohanpur, Haringhata Farm, West Bengal 741246
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Chiranjit Mahato
2Indian Institute of Science Education and Research, Kolkata, Campus Rd, Mohanpur, Haringhata Farm, West Bengal 741246
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Dibyendu Das
2Indian Institute of Science Education and Research, Kolkata, Campus Rd, Mohanpur, Haringhata Farm, West Bengal 741246
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Jagannath Mondal
1Tata Institute of Fundamental Research Hyderabad, Telangana, India, 500046
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  • For correspondence: [email protected]
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Abstract

Proteins occurring in significantly high concentrations in cellular environments (over 100 mg/mL) and functioning in crowded cytoplasm, often face the prodigious challenges of aggregation which are the pathological hallmark of aging and are critically responsible for a wide spectrum of rising human diseases. Here we combine a joint-venture of complementary wet-lab experiment and molecular simulation to discern the potential ability of adenosine triphosphate (ATP) as solubilizer of protein aggregates. We show that ATP prevents both condensation of aggregation-prone intrinsically disordered protein Aβ40 and promotes dissolution of pre-formed aggregates. Computer simulation links ATP’s solubilizing role to its ability to modulate protein’s structural plasticity by unwinding protein conformation. We show that ATP is positioned as a superior biological solubilizer of protein aggregates over traditional chemical hydrotropes, potentially holding promises in therapeutic interventions in protein-aggregation related diseases. Going beyond its conventional activity as energy currency, the amphiphilic nature of ATP enables its protein-specific interaction that would enhance ATP’s efficiency in cellular processes.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Email: jmondal{at}tifrh.res.in Phone:+91-40-2020-3091

  • The manuscript has been updated with additional investigations and analysis.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 05, 2024.
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Elucidating ATP’s Role as Solubilizer of Biomolecular Aggregate
Susmita Sarkar, Saurabh Gupta, Chiranjit Mahato, Dibyendu Das, Jagannath Mondal
bioRxiv 2024.01.15.575740; doi: https://doi.org/10.1101/2024.01.15.575740
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Elucidating ATP’s Role as Solubilizer of Biomolecular Aggregate
Susmita Sarkar, Saurabh Gupta, Chiranjit Mahato, Dibyendu Das, Jagannath Mondal
bioRxiv 2024.01.15.575740; doi: https://doi.org/10.1101/2024.01.15.575740

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