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Development of a new genotype–phenotype linked antibody screening system

View ORCID ProfileTakashi Watanabe, Hikaru Hata, Yoshiki Mochizuki, Fumie Yokoyama, Tomoko Hasegawa, Naveen Kumar, Tomohiro Kurosaki, View ORCID ProfileOsamu Ohara, Hidehiro Fukuyama
doi: https://doi.org/10.1101/2024.03.06.581777
Takashi Watanabe
1Laboratory for Integrative Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
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  • For correspondence: [email protected]
Hikaru Hata
2Laboratory for Lymphocyte Differentiation, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
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Yoshiki Mochizuki
1Laboratory for Integrative Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
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Fumie Yokoyama
1Laboratory for Integrative Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
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Tomoko Hasegawa
1Laboratory for Integrative Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
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Naveen Kumar
3Laboratory for Integrated Bioinformatics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
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Tomohiro Kurosaki
2Laboratory for Lymphocyte Differentiation, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
4Laboratory of Lymphocyte Differentiation, WPI Immunology Frontier Research Center, Osaka University, Osaka, 565-0871, Japan
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Osamu Ohara
1Laboratory for Integrative Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
5Department of Applied Genomics, Kazusa DNA Research Institute, Chiba 292-0818, Japan
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Hidehiro Fukuyama
2Laboratory for Lymphocyte Differentiation, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan
6Division of Immunology, Near-InfraRed Photo-Immunotherapy Research Institute, Kansai Medical University, Hirakata, Osaka,573-1010, Japan
7INSERM EST, Strasbourg Cedex 2, 67200, France
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Abstract

Antibodies are powerful tools for the therapy and diagnosis of various diseases. In addition to conventional hybridoma-based screening, recombinant antibody-based screening has become a common choice; however, its application is hampered by two factors: 1) screening starts after Ig gene cloning and recombinant antibody production only, and 2) the antibody is composed of paired chains, heavy and light, commonly expressed by two independent expression vectors. Here, we introduce a method for the rapid screening of recombinant monoclonal antibodies by establishing a Golden Gate-based dual-expression vector and in-vivo expression of membrane-bound antibodies. Using this system, we demonstrate the rapid isolation of influenza cross-reactive antibodies with high affinity from immunized mice within 7 days. This system is particularly useful for isolating therapeutic or diagnostic antibodies, e.g., during foreseen pandemics.

Impact Statement A Golden Gate-based dual-expression vector enables rapid screening, which facilitates efficient isolation of high-affinity cross-reactive antibodies for therapeutic or diagnostic use and provides a crucial advance for pandemic preparedness.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • We have revised the methodology section thoroughly to ensure that the readers can follow and replicate the method. New Supplement Figure 4 and Supplement Figure 5 were added.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted June 29, 2024.
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Development of a new genotype–phenotype linked antibody screening system
Takashi Watanabe, Hikaru Hata, Yoshiki Mochizuki, Fumie Yokoyama, Tomoko Hasegawa, Naveen Kumar, Tomohiro Kurosaki, Osamu Ohara, Hidehiro Fukuyama
bioRxiv 2024.03.06.581777; doi: https://doi.org/10.1101/2024.03.06.581777
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Development of a new genotype–phenotype linked antibody screening system
Takashi Watanabe, Hikaru Hata, Yoshiki Mochizuki, Fumie Yokoyama, Tomoko Hasegawa, Naveen Kumar, Tomohiro Kurosaki, Osamu Ohara, Hidehiro Fukuyama
bioRxiv 2024.03.06.581777; doi: https://doi.org/10.1101/2024.03.06.581777

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