New Results
Complete sequencing of ape genomes
View ORCID ProfileDongAhn Yoo, View ORCID ProfileArang Rhie, Prajna Hebbar, View ORCID ProfileFrancesca Antonacci, View ORCID ProfileGlennis A. Logsdon, View ORCID ProfileSteven J. Solar, View ORCID ProfileDmitry Antipov, View ORCID ProfileBrandon D. Pickett, View ORCID ProfileYana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M. Storer, View ORCID ProfileJiadong Lin, Abigail N. Sequeira, View ORCID ProfileRiley J. Mangan, Glenn Hickey, Graciela Monfort Anez, View ORCID ProfileParithi Balachandran, View ORCID ProfileAnton Bankevich, View ORCID ProfileChristine R. Beck, Arjun Biddanda, Matthew Borchers, Gerard G. Bouffard, Emry Brannan, Shelise Y. Brooks, View ORCID ProfileLucia Carbone, Laura Carrel, View ORCID ProfileAgnes P. Chan, Juyun Crawford, Mark Diekhans, View ORCID ProfileEric Engelbrecht, Cedric Feschotte, View ORCID ProfileGiulio Formenti, View ORCID ProfileGage H. Garcia, View ORCID ProfileLuciana de Gennaro, View ORCID ProfileDavid Gilbert, View ORCID ProfileRichard E. Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S. Harris, View ORCID ProfileGabrielle A. Hartley, View ORCID ProfileWilliam T. Harvey, View ORCID ProfileMichael Hiller, Kendra Hoekzema, Marlys L. Houck, View ORCID ProfileHyeonsoo Jeong, Kaivan Kamali, View ORCID ProfileManolis Kellis, View ORCID ProfileBryce Kille, View ORCID ProfileChul Lee, Youngho Lee, View ORCID ProfileWilliam Lees, Alexandra P. Lewis, Qiuhui Li, View ORCID ProfileMark Loftus, Yong Hwee Eddie Loh, View ORCID ProfileHailey Loucks, View ORCID ProfileJian Ma, View ORCID ProfileYafei Mao, Juan F. I. Martinez, Patrick Masterson, View ORCID ProfileRajiv C. McCoy, Barbara McGrath, Sean McKinney, View ORCID ProfileBritta S. Meyer, Karen H. Miga, View ORCID ProfileSaswat K. Mohanty, View ORCID ProfileKatherine M. Munson, View ORCID ProfileKarol Pal, View ORCID ProfileMatt Pennell, Pavel A. Pevzner, View ORCID ProfileDavid Porubsky, Tamara Potapova, Francisca R. Ringeling, View ORCID ProfileJoana L. Rocha, Oliver A. Ryder, Samuel Sacco, View ORCID ProfileSwati Saha, Takayo Sasaki, View ORCID ProfileMichael C. Schatz, Nicholas J. Schork, Cole Shanks, View ORCID ProfileLinnéa Smeds, Dongmin R. Son, Cynthia Steiner, View ORCID ProfileAlexander P. Sweeten, Michael G. Tassia, View ORCID ProfileFrançoise Thibaud-Nissen, Edmundo Torres-González, View ORCID ProfileMihir Trivedi, View ORCID ProfileWenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, View ORCID ProfileShilong Zhang, Yang Zhang, View ORCID ProfileZhenmiao Zhang, View ORCID ProfileSarah A. Zhao, View ORCID ProfileYixin Zhu, View ORCID ProfileErich D. Jarvis, View ORCID ProfileJennifer L. Gerton, View ORCID ProfileIker Rivas-González, View ORCID ProfileBenedict Paten, View ORCID ProfileZachary A. Szpiech, View ORCID ProfileChristian D. Huber, Tobias L. Lenz, Miriam K. Konkel, Soojin V. Yi, Stefan Canzar, View ORCID ProfileCorey T. Watson, View ORCID ProfilePeter H. Sudmant, View ORCID ProfileErin Molloy, Erik Garrison, View ORCID ProfileCraig B. Lowe, View ORCID ProfileMario Ventura, View ORCID ProfileRachel J. O’Neill, Sergey Koren, View ORCID ProfileKateryna D. Makova, View ORCID ProfileAdam M. Phillippy, View ORCID ProfileEvan E. Eichler
doi: https://doi.org/10.1101/2024.07.31.605654
DongAhn Yoo
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Arang Rhie
2Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Prajna Hebbar
3UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
Francesca Antonacci
4Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy
Glennis A. Logsdon
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
5Department of Genetics, Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19103, USA
Steven J. Solar
2Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Dmitry Antipov
2Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Brandon D. Pickett
2Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Yana Safonova
6Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA
Francesco Montinaro
4Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy
7Institute of Genomics, University of Tartu, Tartu, Estonia
Yanting Luo
8Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA
Joanna Malukiewicz
9Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany
Jessica M. Storer
10Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA
Jiadong Lin
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Abigail N. Sequeira
11Department of Biology, Penn State University, University Park, PA 16802, USA
Riley J. Mangan
12Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
13The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
14Genetics Training Program, Harvard Medical School, Boston, MA 02115, USA
Glenn Hickey
3UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
Graciela Monfort Anez
15Stowers Institute for Medical Research, Kansas City, MO 64110, USA
Parithi Balachandran
16The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA
Anton Bankevich
6Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA
Christine R. Beck
10Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA
16The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA
17Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT, USA
Arjun Biddanda
18Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA
Matthew Borchers
15Stowers Institute for Medical Research, Kansas City, MO 64110, USA
Gerard G. Bouffard
19NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Emry Brannan
20Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA
Shelise Y. Brooks
19NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Lucia Carbone
21Department of Medicine, KCVI, Oregon Health Sciences University, Portland, OR, USA
22Division of Genetics, Oregon National Primate Research Center, Beaverton, OR, USA
Laura Carrel
23PSU Medical School, Penn State University School of Medicine, Hershey, PA, USA
Agnes P. Chan
24The Translational Genomics Research Institute, a part of the City of Hope National Medical Center, Phoenix, AZ, USA
Juyun Crawford
19NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Mark Diekhans
3UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
Eric Engelbrecht
25Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA
Cedric Feschotte
26Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA
Giulio Formenti
27Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10021, USA
Gage H. Garcia
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Luciana de Gennaro
4Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy
David Gilbert
28San Diego Biomedical Research Institute, San Diego, CA, USA
Richard E. Green
29University of California Santa Cruz, Santa Cruz, CA, USA
Andrea Guarracino
30Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA
Ishaan Gupta
31Department of Computer Science and Engineering, University of California San Diego, CA, USA
Diana Haddad
32National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Junmin Han
33Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China
Robert S. Harris
11Department of Biology, Penn State University, University Park, PA 16802, USA
Gabrielle A. Hartley
10Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA
William T. Harvey
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Michael Hiller
34LOEWE Centre for Translational Biodiversity Genomics, Senckenberg Research Institute, Goethe University, Frankfurt, Germany
Kendra Hoekzema
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Marlys L. Houck
35San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA
Hyeonsoo Jeong
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
59Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
Kaivan Kamali
11Department of Biology, Penn State University, University Park, PA 16802, USA
Manolis Kellis
12Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
13The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
Bryce Kille
36Department of Computer Science, Rice University, Houston, TX 77005, USA
Chul Lee
37Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA
Youngho Lee
38Laboratory of bioinformatics and population genetics, Interdisciplinary program in bioinformatics, Seoul National University, Republic of Korea
William Lees
25Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA
39Bioengineering Program, Faculty of Engineering, Bar-Ilan University, Ramat Gan, Israel
Alexandra P. Lewis
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Qiuhui Li
40Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA
Mark Loftus
41Department of Genetics & Biochemistry, Clemson University, Clemson, SC, USA
42Center for Human Genetics, Clemson University, Greenwood, SC, USA
Yong Hwee Eddie Loh
43Neuroscience Research Institute, University of California, Santa Barbara, CA, USA
Hailey Loucks
3UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
Jian Ma
44Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA
Yafei Mao
33Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China
45Center for Genomic Research, International Institutes of Medicine, Fourth Affiliated Hospital, Zhejiang University, Yiwu, Zhejiang, China
46Shanghai Jiao Tong University Chongqing Research Institute, Chongqing, China
Juan F. I. Martinez
6Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA
Patrick Masterson
32National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Rajiv C. McCoy
18Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA
Barbara McGrath
11Department of Biology, Penn State University, University Park, PA 16802, USA
Sean McKinney
15Stowers Institute for Medical Research, Kansas City, MO 64110, USA
Britta S. Meyer
9Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany
Karen H. Miga
3UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
Saswat K. Mohanty
11Department of Biology, Penn State University, University Park, PA 16802, USA
Katherine M. Munson
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Karol Pal
11Department of Biology, Penn State University, University Park, PA 16802, USA
Matt Pennell
47Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA
Pavel A. Pevzner
31Department of Computer Science and Engineering, University of California San Diego, CA, USA
David Porubsky
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Tamara Potapova
15Stowers Institute for Medical Research, Kansas City, MO 64110, USA
Francisca R. Ringeling
48Faculty of Informatics and Data Science, University of Regensburg, 93053 Regensburg, Germany
Joana L. Rocha
49Department of Integrative Biology, University of California, Berkeley, Berkeley, USA
Oliver A. Ryder
35San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA
Samuel Sacco
29University of California Santa Cruz, Santa Cruz, CA, USA
Swati Saha
25Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA
Takayo Sasaki
28San Diego Biomedical Research Institute, San Diego, CA, USA
Michael C. Schatz
40Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA
Nicholas J. Schork
24The Translational Genomics Research Institute, a part of the City of Hope National Medical Center, Phoenix, AZ, USA
Cole Shanks
3UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
Linnéa Smeds
11Department of Biology, Penn State University, University Park, PA 16802, USA
Dongmin R. Son
50Department of Ecology, Evolution and Marine Biology, Neuroscience Research Institute, University of California, Santa Barbara, CA, USA
Cynthia Steiner
35San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA
Alexander P. Sweeten
2Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Michael G. Tassia
18Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA
Françoise Thibaud-Nissen
32National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Edmundo Torres-González
11Department of Biology, Penn State University, University Park, PA 16802, USA
Mihir Trivedi
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
59Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
Wenjie Wei
51School of Life Sciences, Westlake University, Hangzhou 310024, China
52National Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070, Wuhan, China
Julie Wertz
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
Muyu Yang
44Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA
Panpan Zhang
26Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA
Shilong Zhang
33Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China
Yang Zhang
44Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA
Zhenmiao Zhang
31Department of Computer Science and Engineering, University of California San Diego, CA, USA
Sarah A. Zhao
12Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
Yixin Zhu
47Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA
Erich D. Jarvis
37Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA
53Howard Hughes Medical Institute, Chevy Chase, MD, USA
Jennifer L. Gerton
15Stowers Institute for Medical Research, Kansas City, MO 64110, USA
Iker Rivas-González
54Department of Primate Behavior and Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
Benedict Paten
3UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
Zachary A. Szpiech
11Department of Biology, Penn State University, University Park, PA 16802, USA
Christian D. Huber
11Department of Biology, Penn State University, University Park, PA 16802, USA
Tobias L. Lenz
9Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany
Miriam K. Konkel
41Department of Genetics & Biochemistry, Clemson University, Clemson, SC, USA
42Center for Human Genetics, Clemson University, Greenwood, SC, USA
Soojin V. Yi
55Department of Ecology, Evolution and Marine Biology, Department of Molecular, Cellular and Developmental Biology, Neuroscience Research Institute, University of California, Santa Barbara, CA, USA
Stefan Canzar
48Faculty of Informatics and Data Science, University of Regensburg, 93053 Regensburg, Germany
Corey T. Watson
25Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA
Peter H. Sudmant
49Department of Integrative Biology, University of California, Berkeley, Berkeley, USA
56Center for Computational Biology, University of California, Berkeley, Berkeley, USA
Erin Molloy
57Department of Computer Science, University of Maryland, College Park, MD 20742, USA
Erik Garrison
30Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA
Craig B. Lowe
8Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA
Mario Ventura
4Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy
Rachel J. O’Neill
10Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA
17Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT, USA
58Departments of Molecular and Cell Biology, UConn Storrs, CT, USA
Sergey Koren
2Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Kateryna D. Makova
11Department of Biology, Penn State University, University Park, PA 16802, USA
Adam M. Phillippy
2Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Evan E. Eichler
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
59Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
ABSTRACT
We present haplotype-resolved reference genomes and comparative analyses of six ape species, namely: chimpanzee, bonobo, gorilla, Bornean orangutan, Sumatran orangutan, and siamang. We achieve chromosome-level contiguity with unparalleled sequence accuracy (<1 error in 500,000 base pairs), completely sequencing 215 gapless chromosomes telomere-to-telomere. We resolve challenging regions, such as the major histocompatibility complex and immunoglobulin loci, providing more in-depth evolutionary insights. Comparative analyses, including human, allow us to investigate the evolution and diversity of regions previously uncharacterized or incompletely studied without bias from mapping to the human reference. This includes newly minted gene families within lineage-specific segmental duplications, centromeric DNA, acrocentric chromosomes, and subterminal heterochromatin. This resource should serve as a definitive baseline for all future evolutionary studies of humans and our closest living ape relatives.
Competing Interest Statement
E.E.E. is a scientific advisory board (SAB) member of Variant Bio, Inc. C.T.W. is a co-founder/CSO of Clareo Biosciences, Inc. W.L. is a co-founder/CIO of Clareo Biosciences, Inc. The other authors declare no competing interests.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Posted July 31, 2024.
Complete sequencing of ape genomes
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar, Dmitry Antipov, Brandon D. Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M. Storer, Jiadong Lin, Abigail N. Sequeira, Riley J. Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R. Beck, Arjun Biddanda, Matthew Borchers, Gerard G. Bouffard, Emry Brannan, Shelise Y. Brooks, Lucia Carbone, Laura Carrel, Agnes P. Chan, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H. Garcia, Luciana de Gennaro, David Gilbert, Richard E. Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S. Harris, Gabrielle A. Hartley, William T. Harvey, Michael Hiller, Kendra Hoekzema, Marlys L. Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William Lees, Alexandra P. Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F. I. Martinez, Patrick Masterson, Rajiv C. McCoy, Barbara McGrath, Sean McKinney, Britta S. Meyer, Karen H. Miga, Saswat K. Mohanty, Katherine M. Munson, Karol Pal, Matt Pennell, Pavel A. Pevzner, David Porubsky, Tamara Potapova, Francisca R. Ringeling, Joana L. Rocha, Oliver A. Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C. Schatz, Nicholas J. Schork, Cole Shanks, Linnéa Smeds, Dongmin R. Son, Cynthia Steiner, Alexander P. Sweeten, Michael G. Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A. Zhao, Yixin Zhu, Erich D. Jarvis, Jennifer L. Gerton, Iker Rivas-González, Benedict Paten, Zachary A. Szpiech, Christian D. Huber, Tobias L. Lenz, Miriam K. Konkel, Soojin V. Yi, Stefan Canzar, Corey T. Watson, Peter H. Sudmant, Erin Molloy, Erik Garrison, Craig B. Lowe, Mario Ventura, Rachel J. O’Neill, Sergey Koren, Kateryna D. Makova, Adam M. Phillippy, Evan E. Eichler
bioRxiv 2024.07.31.605654; doi: https://doi.org/10.1101/2024.07.31.605654
Complete sequencing of ape genomes
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar, Dmitry Antipov, Brandon D. Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M. Storer, Jiadong Lin, Abigail N. Sequeira, Riley J. Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R. Beck, Arjun Biddanda, Matthew Borchers, Gerard G. Bouffard, Emry Brannan, Shelise Y. Brooks, Lucia Carbone, Laura Carrel, Agnes P. Chan, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H. Garcia, Luciana de Gennaro, David Gilbert, Richard E. Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S. Harris, Gabrielle A. Hartley, William T. Harvey, Michael Hiller, Kendra Hoekzema, Marlys L. Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William Lees, Alexandra P. Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F. I. Martinez, Patrick Masterson, Rajiv C. McCoy, Barbara McGrath, Sean McKinney, Britta S. Meyer, Karen H. Miga, Saswat K. Mohanty, Katherine M. Munson, Karol Pal, Matt Pennell, Pavel A. Pevzner, David Porubsky, Tamara Potapova, Francisca R. Ringeling, Joana L. Rocha, Oliver A. Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C. Schatz, Nicholas J. Schork, Cole Shanks, Linnéa Smeds, Dongmin R. Son, Cynthia Steiner, Alexander P. Sweeten, Michael G. Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A. Zhao, Yixin Zhu, Erich D. Jarvis, Jennifer L. Gerton, Iker Rivas-González, Benedict Paten, Zachary A. Szpiech, Christian D. Huber, Tobias L. Lenz, Miriam K. Konkel, Soojin V. Yi, Stefan Canzar, Corey T. Watson, Peter H. Sudmant, Erin Molloy, Erik Garrison, Craig B. Lowe, Mario Ventura, Rachel J. O’Neill, Sergey Koren, Kateryna D. Makova, Adam M. Phillippy, Evan E. Eichler
bioRxiv 2024.07.31.605654; doi: https://doi.org/10.1101/2024.07.31.605654
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