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Benchmarking DNA Foundation Models for Genomic Sequence Classification
View ORCID ProfileHaonan Feng, Lang Wu, Bingxin Zhao, Chad Huff, Jianjun Zhang, Jia Wu, Lifeng Lin, View ORCID ProfilePeng Wei, View ORCID ProfileChong Wu
doi: https://doi.org/10.1101/2024.08.16.608288
Haonan Feng
1Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
Lang Wu
2Cancer Epidemiology Division, Population Sciences in the Pacific Program, University of Hawaii Cancer Center, University of Hawaii at Manoa, Honolulu, HI, 96813, USA
Bingxin Zhao
3Department of Statistics and Data Science, University of Pennsylvania, Philadelphia, PA, 19104, USA
Chad Huff
4Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
Jianjun Zhang
5Department of Thoracic/Head and Neck Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
Jia Wu
6Department of Imaging Physics, Division of Diagnostic Imaging, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
Lifeng Lin
7Department of Epidemiology and Biostatistics, University of Arizona, Tucson, AZ, 85724, USA
Peng Wei
1Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
Chong Wu
1Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
8Institute for Data Science in Oncology, The UT MD Anderson Cancer Center, Houston, TX, 77030, USA
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Posted August 18, 2024.
Benchmarking DNA Foundation Models for Genomic Sequence Classification
Haonan Feng, Lang Wu, Bingxin Zhao, Chad Huff, Jianjun Zhang, Jia Wu, Lifeng Lin, Peng Wei, Chong Wu
bioRxiv 2024.08.16.608288; doi: https://doi.org/10.1101/2024.08.16.608288
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