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Most Beefalo cattle have no detectable bison genetic ancestry

View ORCID ProfileBeth Shapiro, View ORCID ProfileJonas Oppenheimer, Michael P Heaton, Kristen L Kuhn, View ORCID ProfileRichard E Green, Harvey D Blackburn, Timothy PL Smith
doi: https://doi.org/10.1101/2024.09.16.613218
Beth Shapiro
1Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA 95064, USA
2Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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  • For correspondence: [email protected]
Jonas Oppenheimer
3Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Michael P Heaton
4USDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE, USA
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Kristen L Kuhn
4USDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE, USA
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Richard E Green
3Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Harvey D Blackburn
5USDA, ARS, National Animal Germplasm Program, Fort Collins, CO, USA
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Timothy PL Smith
4USDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE, USA
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Abstract

Hybridization is common among lineages in the genus Bos, often mediated through human management for the selection of adaptive or desirable traits. A recent example is the American Beefalo cattle breed, which was developed in the 1970s and defined as a hybrid between American bison (Bison bison) and cattle (Bos taurus). The American Beefalo Association typically require ⅜ bison ancestry to qualify as Beefalo. Here, we sought to characterize admixed ancestry among Beefalo as a component of a larger project to understand the role of hybridization in shaping present-day diversity in bison and cattle. We generated genomic data from 50 historical and present-day Beefalo and bison hybrids, including several important founding animals, as well as from 10 bison originating from commercial herds that represent potential sources of bison ancestry in Beefalo. We found that most Beefalo did not contain detectable bison ancestry. No individual Beefalo within our data set satisfies the ancestry requirements specified by the American Beefalo Association (ABA), although several Beefalo had smaller proportions of bison ancestry (2-18%). Some beefalo had detectable indicine cattle ancestry (2-38%), suggesting that hybridization of taurine and zebu cattle may contribute to morphological similarity between some Beefalo and bison. Overall, ancestry profiles of Beefalo and bison hybrid genomes are consistent with repeated backcrossing to either parental species rather than the breeding between hybrids themselves, implying significant barriers to gene flow between bison and cattle. Our results call into question the ⅜ bison ancestry targeted by the breed association and demonstrate the value of genomic information in examining claims of interspecies gene flow among Bos species.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted September 19, 2024.
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Most Beefalo cattle have no detectable bison genetic ancestry
Beth Shapiro, Jonas Oppenheimer, Michael P Heaton, Kristen L Kuhn, Richard E Green, Harvey D Blackburn, Timothy PL Smith
bioRxiv 2024.09.16.613218; doi: https://doi.org/10.1101/2024.09.16.613218
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Most Beefalo cattle have no detectable bison genetic ancestry
Beth Shapiro, Jonas Oppenheimer, Michael P Heaton, Kristen L Kuhn, Richard E Green, Harvey D Blackburn, Timothy PL Smith
bioRxiv 2024.09.16.613218; doi: https://doi.org/10.1101/2024.09.16.613218

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