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DNA/polysome phase separation and cell width confinement couple nucleoid segregation to cell growth in Escherichia coli

Alexandros Papagiannakis, Qiwei Yu, Sander K. Govers, Wei-Hsiang Lin, View ORCID ProfileNed S. Wingreen, Christine Jacobs-Wagner
doi: https://doi.org/10.1101/2024.10.08.617237
Alexandros Papagiannakis
1Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA
2Sarafan Chemistry, Engineering, and Medicine for Human Health Institute, Stanford University, Stanford, CA 94305, USA
3Department of Biology, Stanford University, Stanford, CA 94305, USA
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Qiwei Yu
5Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton NJ 08544, USA
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Sander K. Govers
1Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA
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Wei-Hsiang Lin
1Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA
2Sarafan Chemistry, Engineering, and Medicine for Human Health Institute, Stanford University, Stanford, CA 94305, USA
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Ned S. Wingreen
5Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton NJ 08544, USA
6Department of Molecular Biology, Princeton University, Princeton NJ 08544, USA
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  • ORCID record for Ned S. Wingreen
Christine Jacobs-Wagner
1Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA
2Sarafan Chemistry, Engineering, and Medicine for Human Health Institute, Stanford University, Stanford, CA 94305, USA
3Department of Biology, Stanford University, Stanford, CA 94305, USA
4Department of Microbiology and Immunology, School of Medicine, Stanford, CA 94305, USA
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  • For correspondence: [email protected]
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ABSTRACT

Chromosome segregation is essential for cellular proliferation. Unlike eukaryotes, bacteria lack cytoskeleton-based machinery to segregate their chromosomal DNA (nucleoid). The bacterial ParABS system segregates the duplicated chromosomal regions near the origin of replication. However, this function does not explain how bacterial cells partition the rest (bulk) of the chromosomal material. Furthermore, some bacteria, including Escherichia coli, lack a ParABS system. Yet, E. coli faithfully segregates nucleoids across various growth rates. Here, we provide theoretical and experimental evidence that polysome production during chromosomal gene expression helps compact, split, segregate, and position nucleoids in E. coli through phase separation, inherently coupling these processes to biomass growth across nutritional conditions. Halting polysome formation immediately stops sister nucleoid migration while ensuing polysome depletion gradually reverses nucleoid segregation. Redirecting gene expression away from the chromosome and toward plasmids arrests nucleoid segregation and causes ectopic polysome accumulations that drive aberrant nucleoid dynamics. Cell width perturbations show that radial confinement of polysomes and nucleoids spatially controls their phase separation to ensure that nucleoids split along the cell width and segregate along the cell length. Our findings suggest a built-in mechanism for coupling chromosome segregation to cell growth and highlight the importance of cell width regulation in nucleoid segregation.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Few typos were corrected and the figures were formatted to accommodate the sharing permissions.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted October 22, 2024.
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DNA/polysome phase separation and cell width confinement couple nucleoid segregation to cell growth in Escherichia coli
Alexandros Papagiannakis, Qiwei Yu, Sander K. Govers, Wei-Hsiang Lin, Ned S. Wingreen, Christine Jacobs-Wagner
bioRxiv 2024.10.08.617237; doi: https://doi.org/10.1101/2024.10.08.617237
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DNA/polysome phase separation and cell width confinement couple nucleoid segregation to cell growth in Escherichia coli
Alexandros Papagiannakis, Qiwei Yu, Sander K. Govers, Wei-Hsiang Lin, Ned S. Wingreen, Christine Jacobs-Wagner
bioRxiv 2024.10.08.617237; doi: https://doi.org/10.1101/2024.10.08.617237

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