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Computer prediction and genetic analysis identifies retinoic acid modulation as a driver of conserved longevity pathways in genetically-diverse Caenorhabditis nematodes

View ORCID ProfileStephen A. Banse, Christine A. Sedore, View ORCID ProfileAnna L. Coleman-Hulbert, Erik Johnson, Brian Onken, David Hall, Erik Segerdell, E. Grace Jones, Yuhua Song, Hadley Osman, Jian Xue, Elena Battistoni, Suzhen Guo, Anna C. Foulger, Madhuri Achanta, Mustafa Sheikh, Theresa Fitzgibbon, John H. Willis, Gavin C. Woodruff, View ORCID ProfileMonica Driscoll, View ORCID ProfileGordon J. Lithgow, View ORCID ProfilePatrick C. Phillips
doi: https://doi.org/10.1101/2024.10.23.619838
Stephen A. Banse
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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Christine A. Sedore
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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Anna L. Coleman-Hulbert
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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  • ORCID record for Anna L. Coleman-Hulbert
Erik Johnson
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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Brian Onken
2Rutgers University, Dept. of Molecular Biology and Biochemistry, Piscataway, NJ, 08854, USA
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David Hall
3The Buck Institute for Research on Aging, Novato, CA, 94945, USA
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Erik Segerdell
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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E. Grace Jones
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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Yuhua Song
2Rutgers University, Dept. of Molecular Biology and Biochemistry, Piscataway, NJ, 08854, USA
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Hadley Osman
3The Buck Institute for Research on Aging, Novato, CA, 94945, USA
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Jian Xue
2Rutgers University, Dept. of Molecular Biology and Biochemistry, Piscataway, NJ, 08854, USA
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Elena Battistoni
3The Buck Institute for Research on Aging, Novato, CA, 94945, USA
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Suzhen Guo
2Rutgers University, Dept. of Molecular Biology and Biochemistry, Piscataway, NJ, 08854, USA
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Anna C. Foulger
3The Buck Institute for Research on Aging, Novato, CA, 94945, USA
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Madhuri Achanta
2Rutgers University, Dept. of Molecular Biology and Biochemistry, Piscataway, NJ, 08854, USA
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Mustafa Sheikh
3The Buck Institute for Research on Aging, Novato, CA, 94945, USA
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Theresa Fitzgibbon
3The Buck Institute for Research on Aging, Novato, CA, 94945, USA
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John H. Willis
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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Gavin C. Woodruff
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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Monica Driscoll
2Rutgers University, Dept. of Molecular Biology and Biochemistry, Piscataway, NJ, 08854, USA
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  • ORCID record for Monica Driscoll
Gordon J. Lithgow
3The Buck Institute for Research on Aging, Novato, CA, 94945, USA
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  • ORCID record for Gordon J. Lithgow
Patrick C. Phillips
1Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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  • ORCID record for Patrick C. Phillips
  • For correspondence: [email protected]
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Abstract

Aging is a pan-metazoan process with significant consequences for human health and society—discovery of new compounds that ameliorate the negative health impacts of aging promise to be of tremendous benefit across a number of age-based co-morbidities. One method to prioritize a testable subset of the nearly infinite universe of potential compounds is to use computational prediction of their likely anti-aging capacity. Here we present a survey of longevity effects for 16 compounds suggested by a previously published computational prediction set, capitalizing upon the comprehensive, multi-species approach utilized by the Caenorhabditis Intervention Testing Program (CITP). While eleven compounds (aldosterone, arecoline, bortezomib, dasatinib, decitabine, dexamethasone, erlotinib, everolimus, gefitinib, temsirolimus, and thalidomide) either had no effect on median lifespan or were toxic, five compounds (all-trans retinoic acid, berberine, fisetin, propranolol, and ritonavir) extended lifespan in Caenorhabditis elegans. These computer predictions yield a remarkable positive hit rate of 30%. Deeper genetic characterization of the longevity effects of one of the most efficacious compounds, the endogenous signaling ligand all-trans retinoic acid (atRA, designated tretinoin in medical products), which is widely prescribed for treatment of acne, skin photoaging and acute promyelocytic leukemia, demonstrated a requirement for the regulatory kinases AKT-1 and AKT-2. While the canonical Akt-target FOXO/DAF-16 was largely dispensable, other conserved Akt-targets (Nrf2/SKN-1 and HSF1/HSF-1), as well as the conserved catalytic subunit of AMPK AAK-2, were all necessary for longevity extension by atRA. Evolutionary conservation of retinoic acid as a signaling ligand and the structure of the downstream effector network of retinoic acid combine to suggest that the all-trans retinoic acid pathway is an ancient metabolic regulatory system that can modulate lifespan. Our results highlight the potential of combining computational prediction of longevity interventions with the power of nematode functional genetics and underscore that the manipulation of a conserved metabolic regulatory circuit by co-opting endogenous signaling molecules is a powerful approach for discovering aging interventions.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted October 26, 2024.
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Computer prediction and genetic analysis identifies retinoic acid modulation as a driver of conserved longevity pathways in genetically-diverse Caenorhabditis nematodes
Stephen A. Banse, Christine A. Sedore, Anna L. Coleman-Hulbert, Erik Johnson, Brian Onken, David Hall, Erik Segerdell, E. Grace Jones, Yuhua Song, Hadley Osman, Jian Xue, Elena Battistoni, Suzhen Guo, Anna C. Foulger, Madhuri Achanta, Mustafa Sheikh, Theresa Fitzgibbon, John H. Willis, Gavin C. Woodruff, Monica Driscoll, Gordon J. Lithgow, Patrick C. Phillips
bioRxiv 2024.10.23.619838; doi: https://doi.org/10.1101/2024.10.23.619838
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Computer prediction and genetic analysis identifies retinoic acid modulation as a driver of conserved longevity pathways in genetically-diverse Caenorhabditis nematodes
Stephen A. Banse, Christine A. Sedore, Anna L. Coleman-Hulbert, Erik Johnson, Brian Onken, David Hall, Erik Segerdell, E. Grace Jones, Yuhua Song, Hadley Osman, Jian Xue, Elena Battistoni, Suzhen Guo, Anna C. Foulger, Madhuri Achanta, Mustafa Sheikh, Theresa Fitzgibbon, John H. Willis, Gavin C. Woodruff, Monica Driscoll, Gordon J. Lithgow, Patrick C. Phillips
bioRxiv 2024.10.23.619838; doi: https://doi.org/10.1101/2024.10.23.619838

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