Summary
Dravet syndrome (DS) is a severe neurodevelopmental disorder caused by pathogenic variants in the SCN1A gene, which encodes the voltage-gated sodium channel Nav1.1 α subunit. Experiments in animal models of DS – including the haploinsufficient Scn1a+/- mouse – have identified impaired excitability of interneurons in the hippocampus and neocortex; this is thought to underlie the treatment-resistant epilepsy that is a prominent feature of the DS phenotype. However, additional brain structures, such as the medial septum (MS), also express SCN1A. The medial septum is known to play an important role in cognitive function and thus may contribute to the intellectual impairment that also characterizes DS. In this study, we employed whole cell patch clamp recordings in acute brain slices to characterize the electrophysiological properties of MS neurons in Scn1a+/- mice versus age-matched wild-type littermate controls. We found no discernible genotype-related differences in MS cholinergic (ChAT) neurons, but significant dysfunction within MS parvalbumin-expressing (PV) inhibitory neurons in Scn1a+/- mice. We further identified heterogeneity of firing patterns among MS PV neurons, and additional genotype differences in the proportion of subtype representation. These results confirm that the MS is an additional locus of pathology in DS, that may contribute to co- morbidities such as cognitive impairment.
Introduction
Dravet syndrome (DS) is an infantile-onset developmental and epileptic encephalopathy characterized by treatment-resistant epilepsy, temperature-sensitive seizures, developmental delay, intellectual disability, features of autism spectrum disorder, and an increased risk of sudden unexpected death in epilepsy (SUDEP) (Villas et al., 2017). Most patients with DS harbor pathogenic loss-of-function variants in the SCN1A gene, leading to effective haploinsufficiency of the voltage-gated sodium channel Nav1.1 α subunit (Claes et al., 2001).
The hemizygous Scn1a+/- mouse (Mistry et al., 2014) is a well-established preclinical model that accurately replicates key phenotypic features of the human condition. Studies using this and other DS models have provided crucial insights into cellular pathology of the disorder. Notably, all major classes of GABAergic neurons have been found to exhibit impaired action potential generation in mouse models of DS (e.g., (Favero et al., 2018; Goff & Goldberg, 2019; Mattis et al., 2022; Rubinstein et al., 2015; Tai et al., 2014; Tsai et al., 2015)).
Most pre-clinical data characterizing DS pathology has focused on seizure-prone regions, such as the hippocampus and neocortex. However, in addition to seizures, patients with DS also have prominent cognitive, motor, and sleep dysfunction (Darra et al., 2019; Licheni et al., 2018; Selvarajah et al., 2022; Wolff et al., 2006). Even as seizure burden tends to decrease over time, these other symptoms persist and significantly impact quality of life (Villas et al., 2017). As the expression of SCN1A is brain-wide, there is therefore a need to better understand the pathology of DS in other brain regions that may contribute to these diverse symptoms.
Hippocampal theta oscillations provide temporal organization for neuronal assemblies, with relevance for learning and memory (Buzsáki, 2002; Buzsáki & Moser, 2013; Colgin, 2013). Theta oscillations are controlled by the medial septum (MS), a cholinergic nucleus in the basal forebrain that sends dense projections to the hippocampus (Freund & Antal, 1988; Huh et al., 2010; Lee et al., 1994; Vandecasteele et al., 2014). A significant majority of cholinergic neurons and nearly all GABAergic neurons in the MS are reported to express Nav1.1 (Bender et al., 2016). Furthermore, abnormalities of the hippocampal theta rhythm have been identified in animal models of DS (Bender et al., 2013, 2016; Jansen et al., 2021), which may contribute to cognitive impairment.
We hypothesized that MS neurons have impaired excitability in DS. To test this, we employed acute slice whole cell patch-clamp recordings to compare the electrophysiological characteristics of cholinergic (ChAT) and inhibitory, parvalbumin-expressing (PV) neurons in Scn1a+/- mice versus age-matched wild-type (WT) littermate controls. Our findings revealed no discernible genotype-related differences in MS ChAT neurons; however, we observed a pronounced hypoexcitability across all subtypes of PV neurons in Scn1a+/- mice. These findings support the concept that the MS is a locus of pathology in DS and may contribute to intellectual disability and other comorbidities.
Results
As Nav1.1 is reportedly expressed in approximately 90% of cholinergic neurons in the MS (Bender et al., 2016), we began by evaluating the excitability of choline acetyltransferase- expressing (ChAT) MS neurons from Scn1a+/- mice compared to age-matched, WT littermate controls. To enable targeted patching of ChAT neurons in slice, we crossed ChAT-Cre and tdTomato (tdT) reporter mice (ChAT-Cre.TdT), which we bred to double-homozygosity on a C57BL/6 background. We then further crossed these mice with Scn1a+/- mice, which were maintained on a 129S6.SvEvTac background. All experimental F1 mice (Scn1a+/-.ChAT-Cre.TdT and Scn1a+/+. ChAT-Cre.TdT) were therefore on the 50:50 129S6:C57BL/6J genetic background that is standard in the field (Mistry et al., 2014) (Figure 1A). We next confirmed that tdT is selectively expressed in MS ChAT neurons by immunostaining for ChAT and quantifying the co- localization. We found a substantial overlap of tdT expression and ChAT immunopositivity: 99% of tdT-positive neurons stained for ChAT, and 73% of ChAT neurons were well labeled by tdT (Figure 1B-C).
We prepared acute brain slices from these triple-transgenic mice at postnatal day (P)21- 30 and performed targeted whole-cell patch-clamp recordings from tdT+ (i.e., ChAT) neurons in the MS. We found that MS ChAT neurons were slow-firing, consistent with previous reports (Griffith, 1988; Griffith & Matthews, 1986; Markram & Segal, 1990; Mattis et al., 2014; Sotty et al., 2003; Yi et al., 2021) (Figure 1D). We identified no significant differences between the genotypes, as shown by similar input-output curves (Figure 1D-E) and quantification across multiple measurements of electrophysiological properties (Figure 1F-G; Table 1).
We hypothesized that deficits may be evident in non-cholinergic MS cell types, so we next compared the properties of tdT-negative (i.e., ChAT-negative) MS neurons in Scn1a+/- versus WT control mice. Indeed, we found that MS ChAT-negative neurons in Scn1a+/- mice were hypoexcitable, with reduced firing frequency (Figure S1). However, MS ChAT-negative neurons are known to be a heterogeneous mix of glutamatergic neurons and at least two types of GABAergic neurons, parvalbumin (PV)-expressing and somatostatin (SST)-expressing cells, which have distinct firing properties (Sotty et al., 2003; Yi et al., 2021). We therefore opted to selectively record from MS PV neurons, since nearly all GABAergic MS neurons reportedly express Nav1.1 (Bender et al., 2016), and since Scn1a+/- PV neurons show pronounced deficits in hippocampus and neocortex (De Stasi et al., 2016; Favero et al., 2018; Mattis et al., 2022; Tai et al., 2014).
To selectively assay MS PV neurons, we employed the above-described breeding strategy to generate triple-transgenic mice in which tdT expression was under Cre-dependent control and expressed in PV neurons (Figure 2A). Quantification of tdT expression and PV immunostaining revealed 86% of tdT-expressing neurons were PV-positive, and 77% of PV neurons were successfully labeled by tdT (Figure 2B-C). We prepared acute brain slices at P21-30 and performed whole-cell current-clamp recordings from 101 fluorescently labeled MS PV neurons across Scn1a+/- mice and age-matched WT littermate controls. We found that MS PV neurons from Scn1a+/- mice exhibited multiple abnormalities (Table 2) including a marked decrease in repetitive action potential (AP) firing (Figure 2D-F) and significantly reduced AP peak (Figure 2G).
We hypothesized that the hypoexcitability of MS PV neurons in Scn1a+/- mice was due to insufficient Nav1.1 expression. To test this, we examined the impact on these cells of Hm1a, a spider venom toxin that selectively potentiates Nav1.1 by preventing its inactivation (Osteen et al., 2016, 2017). Indeed, we found that bath-application of Hm1a significantly increased firing of Scn1a+/- MS PV neurons (Figure 3).
We additionally examined whether the difference in MS PV neuronal physiology could be due to abnormalities in MS perineuronal nets (PNNs), which form a lattice of extracellular matrix components around neurons, particularly PV neurons, including in the MS (Morris & Henderson, 2000), and may be disrupted in epilepsy (Chaunsali et al., 2021). However, we detected no genotype difference in the intensity of fluorescence signal of labeled PNNs within the MS (Figure S2).
As illustrated in Figure 4A-C, we observed that MS PV neurons in both WT and Scn1a+/- mice exhibited several distinct firing patterns in response to depolarizing step currents. We used two parameters to separate these subtypes – burst length (i.e., the length of the maximal burst of continuous firing), and the coefficient of variation of the inter-spike interval (ISI CoV) – both of which were calculated from the current step trace in which a cell fired the maximal number of APs (Figure 4D). We defined “fast-firing” neurons as those with sustained firing throughout the pulse train (burst length > 800 ms for a 1000 ms current step); these all had a low ISI CoV. We defined “burst-firing” neurons as those with a shorter burst length (< 800 ms) and low ISI CoV (<1); these invariably fired their burst at the onset of the pulse. Finally, we defined “cluster-firing” neurons – which fired in clusters of spikes throughout the pulse – as having a high ISI CoV (>1).
We compared these subtypes of MS PV neurons across a wide range of additional parameters (Table 3). As a direct reflection of our clustering strategy, there were highly significant differences across subtypes in burst length (as well as maximal steady state firing frequency) and ISI CoV. We additionally found significant subtype variability in rheobase, with the fast-firing group having the lowest (Figure 4E), suggesting these were more readily excitable. However, all subtypes displayed characteristic properties of PV cells, with high maximal instantaneous firing rate (Figure 4F) and narrow spikes (Figure 4G).
We next evaluated whether the impairment observed in the combined pool of Scn1a+/- MS PV cells (Figure 2) was seen across each of these different subtypes. Indeed, we noted decreased firing of Scn1a+/- MS fast-firing, burst-firing, and cluster-firing PV cells (Figure 5A-C). Quantitatively, all Scn1a+/- MS PV cells subtypes had significantly impaired repetitive firing that emerged in response to larger depolarizing current injections (Figure 5D, F, H). We again found significantly reduced AP peak (Table 3) and pronounced spike run-down (Figure 5E, G, I) in Scn1a+/- cells relative to WT controls. There were no significant genotype differences in intrinsic neuron properties, including resting potential, input resistance, membrane time constant, or rheobase (Table 3).
Finally, we asked whether there was a genotype difference not only in the properties of neurons within each MS PV subtype, but also in the relative proportion of the subtypes (Figure 6). Indeed, the burst-firing subtype constituted only ∼18% of MS PV cells in WT mice but was more than double that (∼42%) in Scn1a+/- mice. Conversely fast-firing PV cells were the large majority (∼72%) encountered in WT mice but less than half (∼48%) in Scn1a+/- mice. Cluster- firing cells constituted ∼10% of the population in both genotypes.
Discussion
Prior work has identified impairment of PV neurons in mouse models of DS. However, these studies have mainly focused on neurons of the neocortex and hippocampus – i.e., regions that are known to be highly ictogenic. Subcortical brain regions may also contribute to the DS phenotype, but the impact of Nav1.1 haploinsufficiency on these regions remains largely unknown. In this study, we performed targeted patching of ChAT and PV neurons in the MS of Scn1a+/- and age-matched, WT littermate control mice. We found that although MS ChAT neurons are spared, MS PV neurons are significantly hypoexcitable in Scn1a+/- mice, across all identified subtypes as defined by firing pattern. These findings may implicate a medial septal contribution to the cognitive impairment that is a prominent feature of DS.
MS ChAT neurons are functionally preserved in Scn1a+/- mice
Although approximately 90% of MS ChAT neurons are reported to express Nav1.1 (Bender et al., 2016), we identified no differences in these neurons – including no changes in cell intrinsic properties, measurements of repetitive firing, or features of individual action potentials – in Scn1a+/- mice relative to WT littermate controls (Figure 1).
There are multiple potential explanations for this negative result. First, Nav1.1 may not be prominently expressed within MS ChAT neurons in our study: Nav1.1 and MS ChAT antibody staining were previously observed to colocalize, but that was in P60-180 rats (Bender et al., 2016), whereas our study focused upon P21-30 mice. Second, compensatory upregulation of other sodium channel subtypes (as in (Yu et al., 2006)) may have counteracted any functional reduction in sodium current in the Scn1a+/- MS ChAT cells. Finally, MS ChAT cells, which have inherently slow-firing characteristics, may be less sensitive to changes in Nav1.1 expression levels, such that normal action potential generation can be maintained in these cells even with a reduction in sodium current.
Future studies could confirm Nav1.1 expression within the mouse MS ChAT neurons across different developmental timepoints, for instance using the recently generated Scn1a-GFP transgenic mouse line (Yamagata et al., 2023). It may also be the case that Nav1.1 has greater relevance for axonal propagation of action potentials than for action potential generation in MS ChAT cells (as in (Kaneko et al., 2022)); this could be explored by quantifying downstream cholinergic transmission within hippocampus. However, it is notable that hippocampal theta power was preserved in Scn1a+/- mice (Jansen et al., 2021); as hippocampal theta power is mainly established by septal cholinergic inputs to hippocampus (Lee et al., 1994), this suggests that MS ChAT neurons are indeed likely to be functionally normal in this DS model.
Diversity of firing patterns identified within MS PV neurons
Multiple prior studies have identified subtypes of MS neurons based upon their firing patterns (e.g. (Griffith, 1988; Jones et al., 1999; Mattis et al., 2014; Morris et al., 1999; Serafin et al., 1996; Sotty et al., 2003; Yi et al., 2021)). Our results further identify the diversity of firing patterns that can be seen even within the PV neuronal population.
Fast-firing neurons have been previously demonstrated to be PV-positive (Morris et al., 1999; Morris & Henderson, 2000; Yi et al., 2021). This is consistent with our data, especially noting that most WT MS PV neurons are in this category.
Burst-firing neurons, which fire only at the onset of a depolarizing pulse, have also been previously described in the MS (Jones et al., 1999; Morris et al., 1999; Sotty et al., 2003).
Although we did not test the voltage dependence of the burst response – which has been shown to be more pronounced when cells are hyperpolarized (Jones et al., 1999; Morris et al., 1999; Sotty et al., 2003) – our data demonstrate that at least a subset of burst-firing MS cells are PV- positive. A recent characterization of PV versus SST neurons in MS (Yi et al., 2021) did not identify this subtype – perhaps because it is less prominent in WT mice (Figure 6) – but this burst-firing pattern has been identified for PV neurons within other brain regions (e.g., (Brandenburg et al., 2021; Hughes et al., 2012; Qiu et al., 2024)).
Finally, cluster-firing cells have also been previously described in the MS (Mattis et al., 2014; Serafin et al., 1996; Sotty et al., 2003), and in one study several of these were found to be glutamatergic (Sotty et al., 2003). Our results suggest that MS PV cells also exhibit cluster firing properties, and indeed these cluster-firing cells had high maximal instantaneous firing frequency and narrow spike width (Table 3) characteristic of PV cells. However, we cannot exclude the alternative possibility that these cells were among those that were tdT-positive but PV-negative (Figure 2C). This could be clarified by biocytin-filling and post-staining these neurons, although the yield would be low as they constitute only ∼10% of those encountered with tdT-guided patching.
MS PV neurons are impaired in Scn1a+/- mice
We found that MS PV cells were in aggregate highly impaired in Scn1a+/- mice (Figure 2; Table 2), and that this overall pattern was seen across subtypes of PV cells (Figure 5; Table 3). This is consistent with PV neuron impairment identified in other brain regions, including hippocampus and neocortex, in DS models (De Stasi et al., 2016; Favero et al., 2018; Mattis et al., 2022; Tai et al., 2014).
In addition to hypoexcitability within MS PV neuron subtypes in Scn1a+/- mice, we also observed a genotype difference in the proportion of different PV subtypes present in the MS (Figure 6). The most straightforward explanation is differences in ion channel expression (e.g., (Chamberland et al., 2023; Qiu et al., 2024)) converting Scn1a+/- PV cells from a fast-firing to burst-firing pattern. Additionally, neuromodulation can dynamically impact the firing pattern within individual inhibitory cells (e.g., (Goff et al., 2023; Goff & Goldberg, 2019; Prönneke et al., 2020)). Regardless of underlying mechanism, our results highlight that neuronal dysfunction in Scn1a+/- mice may manifest not only as impaired firing within a given subtype of neurons, but also a shift in representation of different subtypes across the population.
What might be the circuit and behavioral implications of MS PV cell dysfunction in DS? Septal inhibitory neurons synapse selectively onto inhibitory neurons in hippocampus (Freund & Antal, 1988), thereby disinhibiting hippocampal principal cells (Tóth et al., 1997) and pacing hippocampal theta oscillations (Etter et al., 2023; Gerashchenko et al., 2001; Hangya et al., 2009). Reduced hippocampal theta frequency was observed in a haploinsufficient mouse model of DS (Jansen et al, 2021), which may contribute to the cognitive deficits seen in related mice (e.g. (S. Han et al., 2012; Ito et al., 2013)). WT rats with focal siRNA-induced knockdown of Nav1.1 exclusively within the MS also had reduced theta frequency (Bender et al., 2013, 2016), directly implicating the MS in this finding. Future studies will elucidate dysfunction of the septohippocampal circuit in Scn1a+/- mice and will parse the relative contributions of septal and hippocampal circuit elements to impairment of theta oscillations and hippocampal-dependent cognitive tasks.
Therapeutic interventions to restore Nav1.1 expression levels have demonstrated tremendous preclinical promise in DS (Fadila et al., 2023; Z. Han et al., 2020; Mich et al., 2023; Mora-Jimenez et al., 2021; Tanenhaus et al., 2022; Yuan et al., 2023). Our results underscore the “whole-brain” nature of DS: optimizing these treatments to achieve a brain-wide rescue will likely maximize their therapeutic effect across both seizure and non-seizure symptoms of DS.
Materials and methods
Experimental animals
All animal use was conducted under protocols approved by the University of Michigan Institutional Animal Care and Use Committee (IACUC) and were in accordance with the National Institutes of Health (NIH) Guide for the Care and Use of Laboratory Animals. Mice were maintained in a controlled-temperature environment, on a 12-hour light/dark cycle, with access to food and water ad libitum. All mice were genotyped via PCR analysis of tissue obtained at P5-P10 via amputation of a toe at the most distal joint.
Mice carrying the Scn1atm1Kea targeted null allele on the 129S6/SvEvTac background (129S.Scn1a+/-, RRID:MMRRC_037107-JAX) were provided as a generous gift from the laboratory of Dr. Lori Isom. To generate mice used for this study, male 129S.Scn1a+/- mice were crossed to either WT or Cre-driver female mice (see below) on the C57BL/6J (B6) background (RRID: IMSR_JAX:000664). Hemizygous progeny from these crosses (B6.Scn1a+/-) have a mixed 50:50 129S:B6 background and exhibit an overt phenotype including spontaneous seizures and premature lethality (Miller et al., 2014; Mistry et al., 2014).
To enable visualization of ChAT or PV neurons in Scn1a+/- mice, we performed the following breeding to ultimately express tdT within these neuron types: Males homozygous for either the Chattm2(cre)Lowl/J (RRID:IMSR_JAX:006410) or Pvalbtm1(cre)Arbr/J (RRID:IMSR_JAX:017320) transgenic Cre cassette were crossed with females homozygous for the Ai14 tdT reporter cassette (RRID:IMSR_JAX:007914), yielding double-heterozygous ChAT- Cre.tdT and PV-Cre.tdT mice. Progeny from this cross were bred with each other and their double-homozygous offspring were identified by PCR. Double-homozygous ChAT-Cre.tdT and
PV-Cre.tdT females were then crossed with 129S.Scn1a+/- males and their progeny were used in all experiments.
Acute slice preparation
Mice (P21-30) were deeply anesthetized using inhaled isoflurane, confirmed by a toe pinch test. Subsequently, their brains were swiftly removed and immersed in an ice-cold sucrose solution composed of the following concentrations (in mM): NaCl 87, sucrose 75, KCl 2.5, CaCl2 1.0, MgSO4 2.0, NaHCO3 26, NaH2PO4 1.25, and glucose 10, supplemented with 95% O2 and 5% CO2. Coronal brain slices of 300 μm were prepared utilizing a Leica VT-1200S vibratome (Leica Microsystems Inc., Buffalo Grove, IL, USA). These slices were transferred to a holding chamber filled with oxygenated artificial cerebrospinal fluid (ACSF) containing the following concentrations (in mM): NaCl 125, KCl 2.5, CaCl2 2.0, MgSO4 1.0, NaHCO3 26, NaH2PO4 1.25, and glucose 10. Following transfer, the slices were allowed to recover at 32°C for 30 minutes, followed by an additional 30 minutes at room temperature before initiating recording procedures.
Slice electrophysiology
Whole-cell patch clamp recordings were conducted using a SliceScope Pro 6000 electrophysiology system (Scientifica). Slices were transferred to a recording chamber and continuously perfused with oxygenated artificial cerebrospinal fluid (ACSF), which was bubbled with 95% O2 and 5% CO2, maintaining a perfusion rate of approximately 1 mL/min. Slice physiology experiments were conducted at 31°C, with the exception of Hm1a wash-on experiments (see below). For whole-cell recordings, borosilicate glass electrodes were employed, pulled to achieve a tip resistance of 3-4 MΩ using a P-97 puller (Sutter Instruments). These electrodes were filled with a K-Gluconate internal solution (K-gluconate 130, KCl 6.3, EGTA 0.5, MgCl2 1.0, HEPES 10, Mg-ATP 4.0, and Na-GTP 0.3, in mM). The pH of the internal solution was adjusted to 7.30 using KOH, and the osmolarity was set to 285 mOsm with 30% sucrose. Electrode positioning was facilitated using a PatchStar manipulator (Scientifica).
Current was injected as needed to maintain cells at -60 mV during the current step protocol. Throughout current clamp experiments, series resistance compensation (bridge balance) was consistently applied, with periodic readjustments as deemed necessary. No liquid junction potential correction was performed. Data were included for final analysis only from cells with a resting potential below -50 mV for ChAT cells and below -60 mV for PV cells.
Hm1a (Alomone Labs STH-601) was used at a 250 nM final concentration in ACSF. Hm1a was perfused at a rate of 1 mL/min after a baseline recording was obtained. To improve the stability of our recordings across longer time periods, we performed these experiments at room temperature and with a more limited range of current steps.
Analysis of whole-cell electrophysiology data
The analysis was conducted blind to genotype using custom Python software (https://github.com/mattis-laboratory/Slice-Physiology-Automated-Analysis) and the pyABF package (available at https://pypi.org/project/pyabf). An action potential (AP) was defined as crossing 0 mV and having a threshold characterized by a derivative of the voltage (dV/dt) greater than 10 mV/ms. Single AP properties were derived from the initial AP elicited during the rheobase sweep, with rheobase defined as the minimal current injection necessary to evoke an AP using 1 s sweeps with 20 pA intervals. The current/frequency plot was generated based on the average steady-state firing frequency computed at each current step. Similarly, the fold- rheobase plot was derived from the same dataset, normalizing the current to each cell’s rheobase and considering only integer values of fold-rheobase. The maximal steady-state firing frequency was computed as the highest average firing frequency across all 1 s sweeps.
Additionally, the maximal instantaneous firing frequency was calculated as the inverse of the shortest inter-spike interval observed across all sweeps. Action potential duration (APD) 50 and 90 represented the durations from threshold to the points at which the AP achieved 50% or 90% of repolarization, respectively.
The inter-spike interval (ISI) covariation was calculated as the standard deviation divided by the mean of all ISIs in the maximum frequency sweep. To determine the length of the first burst in each maximum frequency sweep, we first determined the mean and standard deviation of all inter-spike intervals. We defined a burst as having terminated when the gap between APs was greater than the mean plus three standard deviations. The burst length was then the time difference from the last AP before the cessation and the first AP (Goff & Goldberg, 2019).
All other parameters were computed according to previously established methodologies (Mattis et al., 2022).
Immunohistochemistry
Mice were deeply anesthetized with isoflurane and transcardially perfused with ice-cold PBS followed by 4% paraformaldehyde (PFA) in PBS. Brains were removed and post-fixed at 4°C overnight in 4% PFA, then equilibrated overnight in 30% sucrose at 4°C. Tissue was sectioned at a thickness of 40 μm using a frozen microtome (Leica Biosystems) and sections were placed in cryoprotectant (25% glycerol, 30% ethylene glycol in PBS, pH adjusted to 6.7 with HCl) for long-term storage at -20°C. Sections were washed in PBS prior to immunostaining to remove residual cryoprotectant.
For both ChAT and PV immunostaining, sections were blocked and permeabilized in PBS containing 0.3% Triton X-100 and 3% normal donkey serum or 10% normal goat serum as appropriate for the choice of secondary antibody. Sections were incubated for 24 or 48 hours at room temperature with guinea pig anti-PV (Synaptic Systems, cat. no. 195308) or rabbit anti- ChAT (Invitrogen, cat. no. PIPA529653), respectively. Primary antibodies were diluted 1:1000 in the appropriate blocking solution. Following primary antibody incubation, sections were washed with PBS. Fresh 1:500 dilutions of secondary antibodies in the appropriate blocking solution were prepared prior to incubation. Sections were incubated for 2 hours in goat anti-guinea pig Alexa Fluor 488 (ThermoFisher, cat no., A-11073) or for 3 hours in donkey anti-rabbit Alexa Fluor 488 (Jackson ImmunoResearch, cat. no. 711-545-152) for PV or ChAT immunostaining, respectively. All sections were then washed in PBS, incubated in 1:50,000 DAPI (ThermoFisher, cat. no. D1306) in PBS at room temperature for 15 minutes and washed a final time in PBS. Sections were mounted and cover-slipped with PVA-DABCO mounting medium (MilliporeSigma, cat. no. 10981). Images were acquired using a Nikon fluorescent microscope.
To label PNNs, free-floating sections were washed briefly in PBS. Sections were then incubated for 24 hours at room temperature with biotinylated Wisteria floribunda lectin (Vector Laboratories, cat. no. B-1355-2) diluted 1:1000 in PBS containing 0.3% Triton X-100 (PBST). Sections were then washed again with PBS and incubated for 2 hours at room temperature with streptavidin conjugated to Alexa Fluor 488 (ThermoFisher, cat. no. S11223) diluted 1:1000 in PBST. Sections were washed a final time with PBS, then mounted and cover-slipped with PVA- DABCO.
Image Analysis
Intensity of fluorescence signal of labeled PNNs in MS was quantified using Nikon NIS- Elements software. Images of MS-containing sections stained for PNNs were acquired and a region of interest (ROI) was manually drawn around the MS. For each section, a second ROI was also drawn in an adjacent region containing no apparent fluorescent labeling to obtain a background signal for normalization. The Nikon software was used to measure the mean fluorescence intensity for each ROI; normalized mean fluorescence was then calculated by dividing the mean intensity of each MS-containing ROI by that of the background ROI within the same section. These data were analyzed and plotted using GraphPad Prism.
Acknowledgments
We thank all members of the Mattis lab for helpful discussion. This work was supported by NIH NINDS K08 NS121464 (JM) and the Kenneth Eisenberg Taubman Emerging Scholar Award (JM).
Footnotes
Conflict of Interest statement: The authors declare no competing financial interests.