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Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo

Ralf Gilsbach, Martin Schwaderer, Sebastian Preissl, Björn A. Grüning, David Kranzhöfer, Pedro Schneider, Thomas G. Nührenberg, Sonia Mulero-Navarro, Dieter Weichenhan, Christian Braun, Martina Dreßen, Adam R. Jacobs, Harald Lahm, Torsten Doenst, Rolf Backofen, Markus Krane, Bruce D. Gelb, Lutz Hein
doi: https://doi.org/10.1101/203075
Ralf Gilsbach
1Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Freiburg, Germany
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Martin Schwaderer
1Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Freiburg, Germany
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Sebastian Preissl
1Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Freiburg, Germany
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Björn A. Grüning
2Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
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David Kranzhöfer
1Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Freiburg, Germany
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Pedro Schneider
1Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Freiburg, Germany
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Thomas G. Nührenberg
1Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Freiburg, Germany
3University Heart Center Freiburg • Bad Krozingen, Department for Cardiology und Angiology II, Bad Krozingen, Germany
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Sonia Mulero-Navarro
4The Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, USA
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Dieter Weichenhan
5Epigenomics and Cancer Risk Factors, German Cancer Research Center (DKFZ), Heidelberg, Germany
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Christian Braun
6Forensic Institute, Ludwig-Maximilians-University, Munich, Germany
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Martina Dreßen
7Department of Cardiovascular Surgery, Division of Experimental Surgery, German Heart Center, Munich, Germany
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Adam R. Jacobs
8Department of Obstetrics, Gynecology and Reproductive Science, Icahn School of Medicine at Mount Sinai, New York, USA
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Harald Lahm
7Department of Cardiovascular Surgery, Division of Experimental Surgery, German Heart Center, Munich, Germany
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Torsten Doenst
9Department of Cardiothoracic Surgery, Jena University Hospital, Friedrich-Schiller-University, Jena, Germany
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Rolf Backofen
2Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
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Markus Krane
7Department of Cardiovascular Surgery, Division of Experimental Surgery, German Heart Center, Munich, Germany
10DZHK (German Center for Cardiovascular Research) - Partner Site Munich Heart Alliance, Munich, Germany
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Bruce D. Gelb
4The Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, USA
11Department of Genetics and Genomic Sciences & Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, USA
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Lutz Hein
1Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Freiburg, Germany
12BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany
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  • For correspondence: lutz.hein@pharmakol.uni-freiburg.de
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Abstract

Epigenetic mechanisms and transcription factor networks essential for differentiation of cardiac myocytes have been uncovered. However, reshaping of the epigenome of these terminally differentiated cells during fetal development, postnatal maturation and in disease remains unknown. Thus, the aim of this study was to determine the dynamics of the cardiac myocyte epigenome during development and in chronic heart failure. Prenatal development and postnatal maturation are characterized by a cooperation of active CpG methylation and histone marks at cis-regulatory and genic regions to shape the cardiac myocyte transcriptome. In contrast, pathological gene expression in terminal heart failure is accompanied by changes in active histone marks without major alterations in CpG methylation and repressive chromatin marks. Notably, cis-regulatory regions in cardiac myocytes are significantly enriched for cardiovascular disease-associated variants. This study uncovers distinct layers of epigenetic regulation not only during prenatal development and postnatal maturation but also in diseased human cardiac myocytes.

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Posted October 16, 2017.
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Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
Ralf Gilsbach, Martin Schwaderer, Sebastian Preissl, Björn A. Grüning, David Kranzhöfer, Pedro Schneider, Thomas G. Nührenberg, Sonia Mulero-Navarro, Dieter Weichenhan, Christian Braun, Martina Dreßen, Adam R. Jacobs, Harald Lahm, Torsten Doenst, Rolf Backofen, Markus Krane, Bruce D. Gelb, Lutz Hein
bioRxiv 203075; doi: https://doi.org/10.1101/203075
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Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
Ralf Gilsbach, Martin Schwaderer, Sebastian Preissl, Björn A. Grüning, David Kranzhöfer, Pedro Schneider, Thomas G. Nührenberg, Sonia Mulero-Navarro, Dieter Weichenhan, Christian Braun, Martina Dreßen, Adam R. Jacobs, Harald Lahm, Torsten Doenst, Rolf Backofen, Markus Krane, Bruce D. Gelb, Lutz Hein
bioRxiv 203075; doi: https://doi.org/10.1101/203075

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