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Use of a Neural Circuit Probe to Validate in silico Predictions of Inhibitory Connections

Honglei Liu, Daniel Bridges, Connor Randall, Sara A. Solla, Bian Wu, Paul Hansma, Xifeng Yan, Kenneth S. Kosik, Kristofer Bouchard
doi: https://doi.org/10.1101/204594
Honglei Liu
1Department of Computer Science, University of California, Santa Barbara, USA
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Daniel Bridges
2Department of Physics, University of California, Santa Barbara, USA
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Connor Randall
2Department of Physics, University of California, Santa Barbara, USA
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Sara A. Solla
3Department of Physiology, Northwestern University, chicago, USA
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Bian Wu
4Neuroscience Research Institute, University of California, Santa Barbara, USA
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Paul Hansma
2Department of Physics, University of California, Santa Barbara, USA
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Xifeng Yan
1Department of Computer Science, University of California, Santa Barbara, USA
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Kenneth S. Kosik
4Neuroscience Research Institute, University of California, Santa Barbara, USA
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Kristofer Bouchard
5Biological Systems and Engineering Division, Lawrence-Berkeley National Laboratory, Berkeley, USA
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Abstract

Understanding how neuronal signals propagate in local network is an important step in understanding information processing. As a result, spike trains recorded with Multi-electrode Arrays (MEAs) have been widely used to study behaviors of neural connections. Studying the dynamics of neuronal networks requires the identification of both excitatory and inhibitory connections. The detection of excitatory relationships can robustly be inferred by characterizing the statistical relationships of neural spike trains. However, the identification of inhibitory relationships is more difficult: distinguishing endogenous low firing rates from active inhibition is not obvious. In this paper, we propose an in silico interventional procedure that makes predictions about the effect of stimulating or inhibiting single neurons on other neurons, and thereby gives the ability to accurately identify inhibitory causal relationships. To experimentally test these predictions, we have developed a Neural Circuit Probe (NCP) that delivers drugs transiently and reversibly on individually identified neurons to assess their contributions to the neural circuit behavior. With the help of NCP, three inhibitory connections identified by our in silico modeling were validated through real interventional experiments. Together, these methods provide a basis for mapping complete neural circuits.

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Posted October 19, 2017.
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Use of a Neural Circuit Probe to Validate in silico Predictions of Inhibitory Connections
Honglei Liu, Daniel Bridges, Connor Randall, Sara A. Solla, Bian Wu, Paul Hansma, Xifeng Yan, Kenneth S. Kosik, Kristofer Bouchard
bioRxiv 204594; doi: https://doi.org/10.1101/204594
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Use of a Neural Circuit Probe to Validate in silico Predictions of Inhibitory Connections
Honglei Liu, Daniel Bridges, Connor Randall, Sara A. Solla, Bian Wu, Paul Hansma, Xifeng Yan, Kenneth S. Kosik, Kristofer Bouchard
bioRxiv 204594; doi: https://doi.org/10.1101/204594

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