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Bioinformatics Workflow Management With The Wobidisco Ecosystem

View ORCID ProfileSebastien Mondet, View ORCID ProfileBulent Arman Aksoy, View ORCID ProfileLeonid Rozenberg, View ORCID ProfileIsaac Hodes, View ORCID ProfileJeff Hammerbacher
doi: https://doi.org/10.1101/213884
Sebastien Mondet
†Department of Microbiology and Immunology, Medical University of South Carolina, Charleston, SC 29425,
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  • ORCID record for Sebastien Mondet
  • For correspondence: smondet@hammerlab.org arman@hammerlab.org
Bulent Arman Aksoy
†Department of Microbiology and Immunology, Medical University of South Carolina, Charleston, SC 29425,
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  • ORCID record for Bulent Arman Aksoy
  • For correspondence: arman@hammerlab.org
Leonid Rozenberg
‡Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029,
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  • For correspondence: leonidr@hammerlab.org
Isaac Hodes
§Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029,
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  • For correspondence: issac@hammerlab.org
Jeff Hammerbacher
¶Department of Microbiology and Immunology, Medical University of South Carolina, Charleston, SC 29425,
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To conduct our computational experiments, our team developed a set of workflow-management-related projects: Ketrew, Biokepi, and Coclobas. The family of tools and libraries are designed with reliability and flexibility as main guiding principles. We describe the components of the software stack and explain the choices we made. Every piece of software is free and open-source; the umbrella documentation project is available at https://github.com/hammerlab/wobidisco.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted November 07, 2017.
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Bioinformatics Workflow Management With The Wobidisco Ecosystem
Sebastien Mondet, Bulent Arman Aksoy, Leonid Rozenberg, Isaac Hodes, Jeff Hammerbacher
bioRxiv 213884; doi: https://doi.org/10.1101/213884
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Bioinformatics Workflow Management With The Wobidisco Ecosystem
Sebastien Mondet, Bulent Arman Aksoy, Leonid Rozenberg, Isaac Hodes, Jeff Hammerbacher
bioRxiv 213884; doi: https://doi.org/10.1101/213884

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