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Arteria: An automation system for a sequencing core facility

Johan Dahlberg, Johan Hermansson, Steinar Sturlaugsson, Pontus Larsson
doi: https://doi.org/10.1101/214858
Johan Dahlberg
Dept. of Medical Sciences, Molecular Medicine and SciLifeLab Uppsala University, Uppsala, Sweden
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  • For correspondence: johan.dahlberg@medsci.uu.se
Johan Hermansson
Dept. of Medical Sciences, Molecular Medicine and SciLifeLab Uppsala University, Uppsala, Sweden
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Steinar Sturlaugsson
Dept. of Medical Sciences, Molecular Medicine and SciLifeLab Uppsala University, Uppsala, Sweden
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Pontus Larsson
Dept. of Medical Sciences, Molecular Medicine and SciLifeLab Uppsala University, Uppsala, Sweden
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Abstract

Arteria is an automation system aimed at sequencing core facilities. It is built on existing open source technologies, with a modular design allowing for a community-driven effort to create plug-and-play micro-services. Herein we describe the Arteria system and elaborate on the underlying conceptual framework. The Arteria system breaks down into three conceptual levels; orchestration, process and execution. At the orchestration level it utilizes an event-based model of automation. It models processes, e.g. the steps involved in processing sequencing data, as workflows and executes these in a micro-service based environment. This creates a system which is both flexible and scalable. The Arteria Project code is available as open source software at http://www.github.com/arteria-project.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted November 06, 2017.
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Arteria: An automation system for a sequencing core facility
Johan Dahlberg, Johan Hermansson, Steinar Sturlaugsson, Pontus Larsson
bioRxiv 214858; doi: https://doi.org/10.1101/214858
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Arteria: An automation system for a sequencing core facility
Johan Dahlberg, Johan Hermansson, Steinar Sturlaugsson, Pontus Larsson
bioRxiv 214858; doi: https://doi.org/10.1101/214858

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