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Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

Ian T Fiddes, Gerrald A Lodewijk, Meghan Mooring, Colleen M Bosworth, Adam D Ewing, Gary L Mantalas, Adam M Novak, Anouk van den Bout, Alex Bishara, Jimi L Rosenkrantz, Ryan Lorig-Roach, Andrew R Field, Maximillian Haeussler, Lotte Russo, Aparna Bhaduri, Tomasz J. Nowakowski, Alex A. Pollen, Max L. Dougherty, Xander Nuttle, Marie-Claude Addor, Simon Zwolinski, Sol Katzman, Arnold Kreigstein, Evan E. Eichler, Sofie R Salama, Frank MJ Jacobs, David Haussler
doi: https://doi.org/10.1101/221226
Ian T Fiddes
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
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Gerrald A Lodewijk
2University of Amsterdam, Swammerdam Institute for Life Sciences, Amsterdam, The Netherlands
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Meghan Mooring
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
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Colleen M Bosworth
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
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Adam D Ewing
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
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Gary L Mantalas
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
3Molecular, Cell and Developmental Biology, of California Santa Cruz, Santa Cruz, California, United States of America
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Adam M Novak
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
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Anouk van den Bout
2University of Amsterdam, Swammerdam Institute for Life Sciences, Amsterdam, The Netherlands
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Alex Bishara
4Department of Computer Science and Department of Medicine, Division of Hematology, Stanford University, California, USA
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Jimi L Rosenkrantz
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
5Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, California, United States of America
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Ryan Lorig-Roach
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
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Andrew R Field
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
3Molecular, Cell and Developmental Biology, of California Santa Cruz, Santa Cruz, California, United States of America
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Maximillian Haeussler
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
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Lotte Russo
2University of Amsterdam, Swammerdam Institute for Life Sciences, Amsterdam, The Netherlands
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Aparna Bhaduri
6The Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research at UCSF, San Francisco, USA
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Tomasz J. Nowakowski
6The Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research at UCSF, San Francisco, USA
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Alex A. Pollen
6The Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research at UCSF, San Francisco, USA
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Max L. Dougherty
7Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
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Xander Nuttle
8Center for Genomic Medicine, Massachusetts General Hospital, Harvard Medical School, and Broad Institute of MIT and Harvard, Boston, Massachusetts, United States of America
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Marie-Claude Addor
9Service de génétique médicale, Lausanne, Switzerland
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Simon Zwolinski
10Department of Cytogenetics, Northern Genetics Service, Institute of Genetic Medicine, Newcastle upon Tyne, United Kingdom
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Sol Katzman
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
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Arnold Kreigstein
6The Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research at UCSF, San Francisco, USA
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Evan E. Eichler
7Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
11Howard Hughes Medical Institute, University of Washington, Seattle, WA, United States of America
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Sofie R Salama
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
5Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, California, United States of America
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Frank MJ Jacobs
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
2University of Amsterdam, Swammerdam Institute for Life Sciences, Amsterdam, The Netherlands
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  • For correspondence: haussler@ucsc.edu F.M.J.Jacobs@uva.nl
David Haussler
1UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America
5Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, California, United States of America
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  • For correspondence: haussler@ucsc.edu F.M.J.Jacobs@uva.nl
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Summary

Genetic changes causing dramatic brain size expansion in human evolution have remained elusive. Notch signaling is essential for radial glia stem cell proliferation and a determinant of neuronal number in the mammalian cortex. We find three paralogs of human-specific NOTCH2NL are highly expressed in radial glia cells. Functional analysis reveals different alleles of NOTCH2NL have varying potencies to enhance Notch signaling by interacting directly with NOTCH receptors. Consistent with a role in Notch signaling, NOTCH2NL ectopic expression delays differentiation of neuronal progenitors, while deletion accelerates differentiation. NOTCH2NL genes provide the breakpoints in typical cases of 1q21.1 distal deletion/duplication syndrome, where duplications are associated with macrocephaly and autism, and deletions with microcephaly and schizophrenia. Thus, the emergence of hominin-specific NOTCH2NL genes may have contributed to the rapid evolution of the larger hominin neocortex accompanied by loss of genomic stability at the 1q21. 1 locus and a resulting recurrent neurodevelopmental disorder.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted December 11, 2017.
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Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis
Ian T Fiddes, Gerrald A Lodewijk, Meghan Mooring, Colleen M Bosworth, Adam D Ewing, Gary L Mantalas, Adam M Novak, Anouk van den Bout, Alex Bishara, Jimi L Rosenkrantz, Ryan Lorig-Roach, Andrew R Field, Maximillian Haeussler, Lotte Russo, Aparna Bhaduri, Tomasz J. Nowakowski, Alex A. Pollen, Max L. Dougherty, Xander Nuttle, Marie-Claude Addor, Simon Zwolinski, Sol Katzman, Arnold Kreigstein, Evan E. Eichler, Sofie R Salama, Frank MJ Jacobs, David Haussler
bioRxiv 221226; doi: https://doi.org/10.1101/221226
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Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis
Ian T Fiddes, Gerrald A Lodewijk, Meghan Mooring, Colleen M Bosworth, Adam D Ewing, Gary L Mantalas, Adam M Novak, Anouk van den Bout, Alex Bishara, Jimi L Rosenkrantz, Ryan Lorig-Roach, Andrew R Field, Maximillian Haeussler, Lotte Russo, Aparna Bhaduri, Tomasz J. Nowakowski, Alex A. Pollen, Max L. Dougherty, Xander Nuttle, Marie-Claude Addor, Simon Zwolinski, Sol Katzman, Arnold Kreigstein, Evan E. Eichler, Sofie R Salama, Frank MJ Jacobs, David Haussler
bioRxiv 221226; doi: https://doi.org/10.1101/221226

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