Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Nicole M. Davis; Diana Proctor; Susan P. Holmes; David A. Relman; Benjamin J. Callahan

doi:10.1101/221499

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Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Nicole M. Davis, Diana Proctor, View ORCID ProfileSusan P. Holmes, David A. Relman, Benjamin J. Callahan

doi: https://doi.org/10.1101/221499

Nicole M. Davis

1Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305

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Diana Proctor

2Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305

6Department of Orofacial Sciences, University of California, San Francisco School of Dentistry, San Francisco, CA 94143

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Susan P. Holmes

3Department of Statistics, Stanford University, Stanford, CA 94305

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ORCID record for Susan P. Holmes

David A. Relman

1Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305

2Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305

4Infectious Diseases Section, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304

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Benjamin J. Callahan

5Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27607

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For correspondence: benjamin.j.callahan@gmail.com

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Posted November 17, 2017.

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Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Nicole M. Davis, Diana Proctor, Susan P. Holmes, David A. Relman, Benjamin J. Callahan

bioRxiv 221499; doi: https://doi.org/10.1101/221499

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Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Nicole M. Davis, Diana Proctor, Susan P. Holmes, David A. Relman, Benjamin J. Callahan

bioRxiv 221499; doi: https://doi.org/10.1101/221499

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