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BCL11A interacts with SOX2 to control the expression of epigenetic regulators in lung squamous cell carcinoma

Kyren A. Lazarus, Fazal Hadi, Elisabetta Zambon, Karsten Bach, Maria-Francesca Santolla, Julie K. Watson, Lucia L. Correia, Madhumita Das, Rosemary Ugur, Sara Pensa, Lukas Becker, Lia S. Campos, Graham Ladds, Pentao Liu, Gerard Evan, Frank McCaughan, John Le Quesne, Joo-Hyeon Lee, Dinis Calado, Walid T. Khaled
doi: https://doi.org/10.1101/223776
Kyren A. Lazarus
1Department of Pharmacology, University of Cambridge, Cambridge, UK
7Cambridge Cancer Centre, Cambridge, UK
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Fazal Hadi
1Department of Pharmacology, University of Cambridge, Cambridge, UK
7Cambridge Cancer Centre, Cambridge, UK
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Elisabetta Zambon
1Department of Pharmacology, University of Cambridge, Cambridge, UK
7Cambridge Cancer Centre, Cambridge, UK
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Karsten Bach
1Department of Pharmacology, University of Cambridge, Cambridge, UK
7Cambridge Cancer Centre, Cambridge, UK
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Maria-Francesca Santolla
1Department of Pharmacology, University of Cambridge, Cambridge, UK
3Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy
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Julie K. Watson
6WT-MRC Stem Cell Institute, University of Cambridge, UK
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Lucia L. Correia
2Department of Biochemistry, University of Cambridge, Cambridge, UK
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Madhumita Das
8MRC Toxicology Unit, Lancaster Road, Leicester
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Rosemary Ugur
1Department of Pharmacology, University of Cambridge, Cambridge, UK
7Cambridge Cancer Centre, Cambridge, UK
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Sara Pensa
1Department of Pharmacology, University of Cambridge, Cambridge, UK
7Cambridge Cancer Centre, Cambridge, UK
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Lukas Becker
1Department of Pharmacology, University of Cambridge, Cambridge, UK
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Lia S. Campos
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Graham Ladds
1Department of Pharmacology, University of Cambridge, Cambridge, UK
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Pentao Liu
4Wellcome Trust Sanger Institute, Cambridge, UK
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Gerard Evan
2Department of Biochemistry, University of Cambridge, Cambridge, UK
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Frank McCaughan
2Department of Biochemistry, University of Cambridge, Cambridge, UK
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John Le Quesne
8MRC Toxicology Unit, Lancaster Road, Leicester
9Cancer Research Centre, University of Leicester
10University Hospitals Leicester NHS trust
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Joo-Hyeon Lee
6WT-MRC Stem Cell Institute, University of Cambridge, UK
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Dinis Calado
5The Francis Crick Institute, London, UK
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Walid T. Khaled
1Department of Pharmacology, University of Cambridge, Cambridge, UK
7Cambridge Cancer Centre, Cambridge, UK
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Abstract

Patients diagnosed with lung squamous cell carcinoma (LUSC) have limited targeted therapeutic options. We report here the identification and characterisation of the transcriptional regulator, BCL11A, as a LUSC oncogene. Analysis of cancer genomics datasets revealed BCL11A to be upregulated in LUSC but not lung adenocarcinoma (LUAD). We demonstrated that knockdown of BCL11A in LUSC cell lines abolished xenograft tumour growth and its overexpression in vivo led to lung airway hyperplasia and the development of reserve cell hyperplastic lesions. In addition, deletion of Bcl11a in the tracheal basal cells abolished the development of tracheosphere organoids while its overexpression led to solid tracheospheres with a squamous phenotype. At the molecular level we found BCL11A to be a target of SOX2 and we show that it is required for the oncogenic role of SOX2 in LUSC. Furthermore, we showed that BCL11A and SOX2 interact at the protein level and that together they co-regulated the expression of several transcription factors. We demonstrate that pharmacological inhibition of SETD8, a gene co-regulated by BCL11A and SOX2, alone or in combination with cisplatin treatment, shows significant selectivity to LUSC in comparison to LUAD cells. Collectively, these results indicate that the disruption of the BCL11A-SOX2 transcriptional program provides a future framework for the development of targeted therapeutic intervention for LUSC patients.

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Posted November 22, 2017.
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BCL11A interacts with SOX2 to control the expression of epigenetic regulators in lung squamous cell carcinoma
Kyren A. Lazarus, Fazal Hadi, Elisabetta Zambon, Karsten Bach, Maria-Francesca Santolla, Julie K. Watson, Lucia L. Correia, Madhumita Das, Rosemary Ugur, Sara Pensa, Lukas Becker, Lia S. Campos, Graham Ladds, Pentao Liu, Gerard Evan, Frank McCaughan, John Le Quesne, Joo-Hyeon Lee, Dinis Calado, Walid T. Khaled
bioRxiv 223776; doi: https://doi.org/10.1101/223776
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BCL11A interacts with SOX2 to control the expression of epigenetic regulators in lung squamous cell carcinoma
Kyren A. Lazarus, Fazal Hadi, Elisabetta Zambon, Karsten Bach, Maria-Francesca Santolla, Julie K. Watson, Lucia L. Correia, Madhumita Das, Rosemary Ugur, Sara Pensa, Lukas Becker, Lia S. Campos, Graham Ladds, Pentao Liu, Gerard Evan, Frank McCaughan, John Le Quesne, Joo-Hyeon Lee, Dinis Calado, Walid T. Khaled
bioRxiv 223776; doi: https://doi.org/10.1101/223776

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