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Shallow whole genome sequencing for robust copy number profiling of formalin-fixed paraffin-embedded breast cancers
View ORCID ProfileSuet Feung Chin, Angela Santoja, Marta Grzelak, Soomin Ahn, Stephen-John Sammut, Harry Clifford, Oscar M. Rueda, Michelle Pugh, Mae A. Goldgraben, Helen A. Bardwell, Eun Yoon Cho, Elena Provenzano, Federico Rojo, Emilio Alba, Carlos Caldas
doi: https://doi.org/10.1101/231480
Suet Feung Chin
1Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK
2Department of Oncology, University of Cambridge, Cambridge CB2 2QQ, UK
9Cancer Research UK Cambridge Cancer Centre, Cambridge, CB2 0QQ, UK
Angela Santoja
3Medical Oncology Service, Hospital Universitario Regional y Virgen de la Victoria, Instituto de Investigación Biomédica de Málaga (IBIMA), Málaga, Spain & Laboratorio de Biología Molecular del Cáncer, Centro de Investigaciones Médico-Sanitarias (CIMES), Universidad de Málaga, Málaga, Spain
Marta Grzelak
1Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK
Soomin Ahn
4Department of Pathology, Seoul National University Bundang Hospital, 82, Gumi-ro 173 Beon-gil, Bundang-gu, Seongnam, Gyeonggi, 13620, Korea. Inivata, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Stephen-John Sammut
1Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK
2Department of Oncology, University of Cambridge, Cambridge CB2 2QQ, UK
9Cancer Research UK Cambridge Cancer Centre, Cambridge, CB2 0QQ, UK
Harry Clifford
1Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK
Oscar M. Rueda
1Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK
9Cancer Research UK Cambridge Cancer Centre, Cambridge, CB2 0QQ, UK
Michelle Pugh
5Inivata UK, The Portway Building, Granta Park, Cambridge, CB21 6GS, United Kingdom
Mae A. Goldgraben
6Department of Medical Genetics, University of Cambridge, Cambridge CB2 0QQ
Helen A. Bardwell
1Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK
Eun Yoon Cho
7Department of Pathology and Translational Genomics, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50 Irwon-dong, Gangnam-gu, Seoul, 135-710, South Korea
Elena Provenzano
8Cambridge Breast Unit, Addenbrooke’s Hospital, Cambridge University Hospital NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Cambridge CB2 2QQ, UK
9Cancer Research UK Cambridge Cancer Centre, Cambridge, CB2 0QQ, UK
Federico Rojo
10Pathology Department, Instituto de Investigación Sanitaria Fundación Jiménez Díaz (IIS-FJD), Madrid, Spain.
11GEICAM-Spanish Breast Cancer Research Group, Madrid, Spain
Emilio Alba
3Medical Oncology Service, Hospital Universitario Regional y Virgen de la Victoria, Instituto de Investigación Biomédica de Málaga (IBIMA), Málaga, Spain & Laboratorio de Biología Molecular del Cáncer, Centro de Investigaciones Médico-Sanitarias (CIMES), Universidad de Málaga, Málaga, Spain
11GEICAM-Spanish Breast Cancer Research Group, Madrid, Spain
Carlos Caldas
1Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK
2Department of Oncology, University of Cambridge, Cambridge CB2 2QQ, UK
8Cambridge Breast Unit, Addenbrooke’s Hospital, Cambridge University Hospital NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Cambridge CB2 2QQ, UK
9Cancer Research UK Cambridge Cancer Centre, Cambridge, CB2 0QQ, UK
Article usage
Posted December 08, 2017.
Shallow whole genome sequencing for robust copy number profiling of formalin-fixed paraffin-embedded breast cancers
Suet Feung Chin, Angela Santoja, Marta Grzelak, Soomin Ahn, Stephen-John Sammut, Harry Clifford, Oscar M. Rueda, Michelle Pugh, Mae A. Goldgraben, Helen A. Bardwell, Eun Yoon Cho, Elena Provenzano, Federico Rojo, Emilio Alba, Carlos Caldas
bioRxiv 231480; doi: https://doi.org/10.1101/231480
Shallow whole genome sequencing for robust copy number profiling of formalin-fixed paraffin-embedded breast cancers
Suet Feung Chin, Angela Santoja, Marta Grzelak, Soomin Ahn, Stephen-John Sammut, Harry Clifford, Oscar M. Rueda, Michelle Pugh, Mae A. Goldgraben, Helen A. Bardwell, Eun Yoon Cho, Elena Provenzano, Federico Rojo, Emilio Alba, Carlos Caldas
bioRxiv 231480; doi: https://doi.org/10.1101/231480
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