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Host_microbe_mapper allows to analyse and interpret the expression of dual RNA-seq measurements and reveals potential microbial contaminations in the data

Thomas Nussbaumer
doi: https://doi.org/10.1101/234278
Thomas Nussbaumer
1CUBE – Division of Computational Systems Biology Dep. of Microbiology and Ecosystem Science, University of Vienna, Austria.
2Chair and Institute of Environmental Medicine, UNIKA-T, Technical University of Munich and Helmholtz Center Munich, Neusäßer Str. 47, 86156 Augsburg.
3Institute of Network Biology (INET), Helmholtz Zentrum München (HMGU), German Research Center for Environmental Health, 85764 Neuherberg, Germany.
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Abstract

Next-generation sequencing technologies provide a wealth of sequencing data. To handle these data amounts, various tools were developed over the last years for mapping, normalisation and functional analyses. To support researchers in the interpretation of expression measurements originating from dual RNA-seq studies and from host-microbe systems in particular, the computational pipeline host_microbe_mapper can be applied to quantify and interpret dual RNA-seq datasets in host-microbe experiments. The pipeline with all the required scripts is stored at the Github repository (https://github.com/nthomasCUBE/hostmicrobemapper).

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted December 14, 2017.
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Host_microbe_mapper allows to analyse and interpret the expression of dual RNA-seq measurements and reveals potential microbial contaminations in the data
Thomas Nussbaumer
bioRxiv 234278; doi: https://doi.org/10.1101/234278
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Host_microbe_mapper allows to analyse and interpret the expression of dual RNA-seq measurements and reveals potential microbial contaminations in the data
Thomas Nussbaumer
bioRxiv 234278; doi: https://doi.org/10.1101/234278

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