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Comparative analysis of neutrophil and monocyte epigenomes
Daniel Rico, Joost HA Martens, Kate Downes, Enrique Carrillo-de-Santa-Pau, Vera Pancaldi, Alessandra Breschi, David Richardson, Simon Heath, Sadia Saeed, Mattia Frontini, Lu Chen, Stephen Watt, Fabian Müller, Laura Clarke, Hindrik HD Kerstens, Steven P Wilder, Emilio Palumbo, Sarah Djebali, Emanuele Raineri, Angelika Merkel, Anna Esteve-Codina, Marc Sultan, Alena van Bommel, Marta Gut, Marie-Laure Yaspo, Miriam Rubio, José María Fernandez, Anthony Attwood, Victor de la Torre, Romina Royo, Stamatina Fragkogianni, Josep Lluis Gelpí, David Torrents, Valentina Iotchkova, Colin Logie, Ali Aghajanirefah, Abhishek A Singh, Eva M Janssen-Megens, Kim Berentsen, Wendy Erber, Augusto Rendon, Myrto Kostadima, Remco Loos, Martijn A van der Ent, Anita Kaan, Nilofar Sharifi, Dirk S Paul, Daniela C Ifrim, Jessica Quintin, Michael I. Love, David G Pisano, Frances Burden, Nicola Foad, Samantha Farrow, Daniel R Zerbino, Ian Dunham, Tacow Kuijpers, Hans Lehrach, Thomas Lengauer, Paul Bertone, Mihai G Netea, Martin Vingron, Stephan Beck, Paul Flicek, Ivo Gut, Willem H Ouwehand, Christoph Bock, Nicole Soranzo, Rodericw Guigo, Alfonso Valencia, Hendrik G Stunnenberg
doi: https://doi.org/10.1101/237784
Daniel Rico
1Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom
Joost HA Martens
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Kate Downes
3Department of Haematology, University of Cambridge, Cambridge, UK
4NHS Blood and Transplant Cambridge Centre, Cambridge Biomedical Campus, Cambridge, UK, CB0 2PT
Enrique Carrillo-de-Santa-Pau
5Structural Biology and BioComputing Programme, Spanish National Cancer Research Center, CNIO, Madrid, Spain
Vera Pancaldi
6Barcelona Supercomputing Centre (BSC), Barcelona, 08034, Spain
Alessandra Breschi
7Centre de Regulació Genòmica (CRG) and Universitat Pompeu Fabra (UPF), Barcelona, Spain
David Richardson
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
Simon Heath
9Centro Nacional de Análisis Genómico, Parc Científic de Barcelona, 08028, Barcelona, Spain
Sadia Saeed
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Mattia Frontini
3Department of Haematology, University of Cambridge, Cambridge, UK
4NHS Blood and Transplant Cambridge Centre, Cambridge Biomedical Campus, Cambridge, UK, CB0 2PT
Lu Chen
3Department of Haematology, University of Cambridge, Cambridge, UK
10Human Genetics, The Morgan Building, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1HH, UK
Stephen Watt
10Human Genetics, The Morgan Building, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1HH, UK
Fabian Müller
11Max Planck Institute for Informatics, Saarbrücken, Germany
Laura Clarke
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
Hindrik HD Kerstens
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Steven P Wilder
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
Emilio Palumbo
7Centre de Regulació Genòmica (CRG) and Universitat Pompeu Fabra (UPF), Barcelona, Spain
Sarah Djebali
7Centre de Regulació Genòmica (CRG) and Universitat Pompeu Fabra (UPF), Barcelona, Spain
Emanuele Raineri
9Centro Nacional de Análisis Genómico, Parc Científic de Barcelona, 08028, Barcelona, Spain
Angelika Merkel
9Centro Nacional de Análisis Genómico, Parc Científic de Barcelona, 08028, Barcelona, Spain
Anna Esteve-Codina
9Centro Nacional de Análisis Genómico, Parc Científic de Barcelona, 08028, Barcelona, Spain
Marc Sultan
12Max Planck Institute for Molecular Genetics, Berlin, Germany
Alena van Bommel
12Max Planck Institute for Molecular Genetics, Berlin, Germany
Marta Gut
9Centro Nacional de Análisis Genómico, Parc Científic de Barcelona, 08028, Barcelona, Spain
Marie-Laure Yaspo
12Max Planck Institute for Molecular Genetics, Berlin, Germany
Miriam Rubio
5Structural Biology and BioComputing Programme, Spanish National Cancer Research Center, CNIO, Madrid, Spain
José María Fernandez
6Barcelona Supercomputing Centre (BSC), Barcelona, 08034, Spain
13National Institute of Bioinformatics (INB), Spain
Anthony Attwood
3Department of Haematology, University of Cambridge, Cambridge, UK
4NHS Blood and Transplant Cambridge Centre, Cambridge Biomedical Campus, Cambridge, UK, CB0 2PT
Victor de la Torre
5Structural Biology and BioComputing Programme, Spanish National Cancer Research Center, CNIO, Madrid, Spain
13National Institute of Bioinformatics (INB), Spain
Romina Royo
6Barcelona Supercomputing Centre (BSC), Barcelona, 08034, Spain
13National Institute of Bioinformatics (INB), Spain
Stamatina Fragkogianni
6Barcelona Supercomputing Centre (BSC), Barcelona, 08034, Spain
Josep Lluis Gelpí
6Barcelona Supercomputing Centre (BSC), Barcelona, 08034, Spain
13National Institute of Bioinformatics (INB), Spain
David Torrents
6Barcelona Supercomputing Centre (BSC), Barcelona, 08034, Spain
14Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, 08010, Spain
Valentina Iotchkova
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
10Human Genetics, The Morgan Building, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1HH, UK
Colin Logie
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Ali Aghajanirefah
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Abhishek A Singh
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Eva M Janssen-Megens
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Kim Berentsen
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Wendy Erber
15School of Pathology and Laboratory Medicine, Faculty of Medicine, Dentistry and Health Sciences. The University of Western Australia (M504), 35 Stirling Highway, Crawley W.A. 6009, Australia
Augusto Rendon
3Department of Haematology, University of Cambridge, Cambridge, UK
23MRC Biostatistics Unit, Institute of Public Health, Cambridge Biomedical Campus, Cambridge, UK, CB2 0SR
Myrto Kostadima
3Department of Haematology, University of Cambridge, Cambridge, UK
4NHS Blood and Transplant Cambridge Centre, Cambridge Biomedical Campus, Cambridge, UK, CB0 2PT
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
Remco Loos
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
Martijn A van der Ent
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Anita Kaan
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Nilofar Sharifi
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Dirk S Paul
16UCL Cancer Institute, University College London, London, United Kingdom
Daniela C Ifrim
17Department of Internal Medicine, Radboudumc, Nijmegen, The Netherlands
Jessica Quintin
17Department of Internal Medicine, Radboudumc, Nijmegen, The Netherlands
Michael I. Love
18Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA
19Department of Biostatistics, Harvard School of Public Health, Boston, MA 02115, USA
David G Pisano
5Structural Biology and BioComputing Programme, Spanish National Cancer Research Center, CNIO, Madrid, Spain
Frances Burden
3Department of Haematology, University of Cambridge, Cambridge, UK
Nicola Foad
3Department of Haematology, University of Cambridge, Cambridge, UK
Samantha Farrow
3Department of Haematology, University of Cambridge, Cambridge, UK
Daniel R Zerbino
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
Ian Dunham
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
Tacow Kuijpers
20Pediatric Hematology, Immunology and Infectious Diseases, Emma Children’s Hospital, Academic Medical Center (AMC), Amsterdam, The Netherlands
Hans Lehrach
12Max Planck Institute for Molecular Genetics, Berlin, Germany
Thomas Lengauer
11Max Planck Institute for Informatics, Saarbrücken, Germany
Paul Bertone
4NHS Blood and Transplant Cambridge Centre, Cambridge Biomedical Campus, Cambridge, UK, CB0 2PT
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
24Genome Biology and Developmental Biology Units, European Molecular Biology Laboratory, Heidelberg, Germany
25Wellcome Trust - Medical Research Council Stem Cell Institute, University of Cambridge, Cambridge, UK
Mihai G Netea
17Department of Internal Medicine, Radboudumc, Nijmegen, The Netherlands
Martin Vingron
12Max Planck Institute for Molecular Genetics, Berlin, Germany
Stephan Beck
16UCL Cancer Institute, University College London, London, United Kingdom
Paul Flicek
8European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom
Ivo Gut
9Centro Nacional de Análisis Genómico, Parc Científic de Barcelona, 08028, Barcelona, Spain
Willem H Ouwehand
3Department of Haematology, University of Cambridge, Cambridge, UK
4NHS Blood and Transplant Cambridge Centre, Cambridge Biomedical Campus, Cambridge, UK, CB0 2PT
Christoph Bock
11Max Planck Institute for Informatics, Saarbrücken, Germany
21CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria
22Department of Laboratory Medicine, Medical University of Vienna, Vienna, Austria
Nicole Soranzo
3Department of Haematology, University of Cambridge, Cambridge, UK
10Human Genetics, The Morgan Building, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1HH, UK
Rodericw Guigo
7Centre de Regulació Genòmica (CRG) and Universitat Pompeu Fabra (UPF), Barcelona, Spain
13National Institute of Bioinformatics (INB), Spain
Alfonso Valencia
6Barcelona Supercomputing Centre (BSC), Barcelona, 08034, Spain
13National Institute of Bioinformatics (INB), Spain
14Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, 08010, Spain
Hendrik G Stunnenberg
2Molecular Biology, RIMLS, FNWI, Radboud University, Nijmegen, The Netherlands
Posted December 22, 2017.
Comparative analysis of neutrophil and monocyte epigenomes
Daniel Rico, Joost HA Martens, Kate Downes, Enrique Carrillo-de-Santa-Pau, Vera Pancaldi, Alessandra Breschi, David Richardson, Simon Heath, Sadia Saeed, Mattia Frontini, Lu Chen, Stephen Watt, Fabian Müller, Laura Clarke, Hindrik HD Kerstens, Steven P Wilder, Emilio Palumbo, Sarah Djebali, Emanuele Raineri, Angelika Merkel, Anna Esteve-Codina, Marc Sultan, Alena van Bommel, Marta Gut, Marie-Laure Yaspo, Miriam Rubio, José María Fernandez, Anthony Attwood, Victor de la Torre, Romina Royo, Stamatina Fragkogianni, Josep Lluis Gelpí, David Torrents, Valentina Iotchkova, Colin Logie, Ali Aghajanirefah, Abhishek A Singh, Eva M Janssen-Megens, Kim Berentsen, Wendy Erber, Augusto Rendon, Myrto Kostadima, Remco Loos, Martijn A van der Ent, Anita Kaan, Nilofar Sharifi, Dirk S Paul, Daniela C Ifrim, Jessica Quintin, Michael I. Love, David G Pisano, Frances Burden, Nicola Foad, Samantha Farrow, Daniel R Zerbino, Ian Dunham, Tacow Kuijpers, Hans Lehrach, Thomas Lengauer, Paul Bertone, Mihai G Netea, Martin Vingron, Stephan Beck, Paul Flicek, Ivo Gut, Willem H Ouwehand, Christoph Bock, Nicole Soranzo, Rodericw Guigo, Alfonso Valencia, Hendrik G Stunnenberg
bioRxiv 237784; doi: https://doi.org/10.1101/237784
Comparative analysis of neutrophil and monocyte epigenomes
Daniel Rico, Joost HA Martens, Kate Downes, Enrique Carrillo-de-Santa-Pau, Vera Pancaldi, Alessandra Breschi, David Richardson, Simon Heath, Sadia Saeed, Mattia Frontini, Lu Chen, Stephen Watt, Fabian Müller, Laura Clarke, Hindrik HD Kerstens, Steven P Wilder, Emilio Palumbo, Sarah Djebali, Emanuele Raineri, Angelika Merkel, Anna Esteve-Codina, Marc Sultan, Alena van Bommel, Marta Gut, Marie-Laure Yaspo, Miriam Rubio, José María Fernandez, Anthony Attwood, Victor de la Torre, Romina Royo, Stamatina Fragkogianni, Josep Lluis Gelpí, David Torrents, Valentina Iotchkova, Colin Logie, Ali Aghajanirefah, Abhishek A Singh, Eva M Janssen-Megens, Kim Berentsen, Wendy Erber, Augusto Rendon, Myrto Kostadima, Remco Loos, Martijn A van der Ent, Anita Kaan, Nilofar Sharifi, Dirk S Paul, Daniela C Ifrim, Jessica Quintin, Michael I. Love, David G Pisano, Frances Burden, Nicola Foad, Samantha Farrow, Daniel R Zerbino, Ian Dunham, Tacow Kuijpers, Hans Lehrach, Thomas Lengauer, Paul Bertone, Mihai G Netea, Martin Vingron, Stephan Beck, Paul Flicek, Ivo Gut, Willem H Ouwehand, Christoph Bock, Nicole Soranzo, Rodericw Guigo, Alfonso Valencia, Hendrik G Stunnenberg
bioRxiv 237784; doi: https://doi.org/10.1101/237784
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