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Complexity-Aware Simple Modeling

View ORCID ProfileMariana Gómez-Schiavon, Hana El-Samad
doi: https://doi.org/10.1101/248419
Mariana Gómez-Schiavon
aDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco CA 94158
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  • ORCID record for Mariana Gómez-Schiavon
Hana El-Samad
aDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco CA 94158
bChan Zuckerberg Biohub, San Francisco, CA 94158
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Abstract

Mathematical models continue to be essential for deepening our understanding of biology. On one extreme, simple or small-scale models help delineate general biological principles. However, the parsimony of detail in these models as well as their assumption of modularity and insulation make them inaccurate for describing quantitative features. On the other extreme, large-scale and detailed models can quantitatively recapitulate a phenotype of interest, but have to rely on many unknown parameters, making them often difficult to parse mechanistically and to use for extracting general principles. We discuss some examples of a new approach — complexity-aware simple modeling — that can bridge the gap between the small‐ and large-scale approaches.

Highlights

  • Simple or small-scale models allow deduction of fundamental principles of biological systems

  • Detailed or large-scale models can be quantitatively accurate but difficult to analyze

  • Complexity-aware simple models can extract principles that are robust to the presence of unknown complex interactions

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Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 17, 2018.
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Complexity-Aware Simple Modeling
Mariana Gómez-Schiavon, Hana El-Samad
bioRxiv 248419; doi: https://doi.org/10.1101/248419
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Complexity-Aware Simple Modeling
Mariana Gómez-Schiavon, Hana El-Samad
bioRxiv 248419; doi: https://doi.org/10.1101/248419

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