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A comprehensive manually-curated Compendium of Bovine Transcription Factors

Marcela M de Souza, View ORCID ProfileJuan M Vaquerizas, View ORCID ProfileAdhemar Zerlotini, View ORCID ProfileLudwig Geistlinger, View ORCID ProfileBenjamín Hernández-Rodríguez, View ORCID ProfilePolyana C Tizioto, View ORCID ProfileJeremy F Taylor, Marina IP Rocha, Wellison JS Diniz, View ORCID ProfileLuiz L Coutinho, View ORCID ProfileLuciana CA Regitano
doi: https://doi.org/10.1101/254011
Marcela M de Souza
1Federal University of São Carlos, São Carlos SP Brazil
2Embrapa Pecuária Sudeste, São Carlos SP Brazil
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Juan M Vaquerizas
3Max Planck Institute for Molecular Biomedicine, Münster 48149 Germany
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Adhemar Zerlotini
4Embrapa Informática Agropecuária, Campinas SP Brazil
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Ludwig Geistlinger
2Embrapa Pecuária Sudeste, São Carlos SP Brazil
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Benjamín Hernández-Rodríguez
3Max Planck Institute for Molecular Biomedicine, Münster 48149 Germany
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Polyana C Tizioto
5NGS Genomic Solutions, Piracicaba SP Brazil
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Jeremy F Taylor
6Division of Animal Science, University of Missouri, Columbia MO 65211-5300 USA
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Marina IP Rocha
1Federal University of São Carlos, São Carlos SP Brazil
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Wellison JS Diniz
1Federal University of São Carlos, São Carlos SP Brazil
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Luiz L Coutinho
7University of São Paulo, Piracicaba SP Brazil
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Luciana CA Regitano
2Embrapa Pecuária Sudeste, São Carlos SP Brazil
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ABSTRACT

Transcription factors (TFs) are pivotal regulatory proteins that control gene expression in a context-dependent and tissue-specific manner. In contrast to human, where comprehensive curated TF collections exist, bovine TFs are only rudimentary recorded and characterized. In this article, we present a manually-curated compendium of 865 sequence-specific DNA-binding bovines TFs, which we analyzed for domain family distribution, evolutionary conservation, and tissue-specific expression. In addition, we provide a list of putative transcription cofactors derived from known interactions with the identified TFs. Since there is a general lack of knowledge concerning the regulation of gene expression in cattle, the curated list of TF should provide a basis for an improved comprehension of regulatory mechanisms that are specific to the species.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 27, 2018.
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A comprehensive manually-curated Compendium of Bovine Transcription Factors
Marcela M de Souza, Juan M Vaquerizas, Adhemar Zerlotini, Ludwig Geistlinger, Benjamín Hernández-Rodríguez, Polyana C Tizioto, Jeremy F Taylor, Marina IP Rocha, Wellison JS Diniz, Luiz L Coutinho, Luciana CA Regitano
bioRxiv 254011; doi: https://doi.org/10.1101/254011
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A comprehensive manually-curated Compendium of Bovine Transcription Factors
Marcela M de Souza, Juan M Vaquerizas, Adhemar Zerlotini, Ludwig Geistlinger, Benjamín Hernández-Rodríguez, Polyana C Tizioto, Jeremy F Taylor, Marina IP Rocha, Wellison JS Diniz, Luiz L Coutinho, Luciana CA Regitano
bioRxiv 254011; doi: https://doi.org/10.1101/254011

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