Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

A comprehensive manually-curated Compendium of Bovine Transcription Factors

Marcela M de Souza, View ORCID ProfileJuan M Vaquerizas, View ORCID ProfileAdhemar Zerlotini, View ORCID ProfileLudwig Geistlinger, View ORCID ProfileBenjamín Hernández-Rodríguez, View ORCID ProfilePolyana C Tizioto, View ORCID ProfileJeremy F Taylor, Marina IP Rocha, Wellison JS Diniz, View ORCID ProfileLuiz L Coutinho, View ORCID ProfileLuciana CA Regitano
doi: https://doi.org/10.1101/254011
Marcela M de Souza
1Federal University of São Carlos, São Carlos SP Brazil
2Embrapa Pecuária Sudeste, São Carlos SP Brazil
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Juan M Vaquerizas
3Max Planck Institute for Molecular Biomedicine, Münster 48149 Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Juan M Vaquerizas
Adhemar Zerlotini
4Embrapa Informática Agropecuária, Campinas SP Brazil
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Adhemar Zerlotini
Ludwig Geistlinger
2Embrapa Pecuária Sudeste, São Carlos SP Brazil
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Ludwig Geistlinger
Benjamín Hernández-Rodríguez
3Max Planck Institute for Molecular Biomedicine, Münster 48149 Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Benjamín Hernández-Rodríguez
Polyana C Tizioto
5NGS Genomic Solutions, Piracicaba SP Brazil
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Polyana C Tizioto
Jeremy F Taylor
6Division of Animal Science, University of Missouri, Columbia MO 65211-5300 USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jeremy F Taylor
Marina IP Rocha
1Federal University of São Carlos, São Carlos SP Brazil
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Wellison JS Diniz
1Federal University of São Carlos, São Carlos SP Brazil
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Luiz L Coutinho
7University of São Paulo, Piracicaba SP Brazil
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Luiz L Coutinho
Luciana CA Regitano
2Embrapa Pecuária Sudeste, São Carlos SP Brazil
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Luciana CA Regitano
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

ABSTRACT

Transcription factors (TFs) are pivotal regulatory proteins that control gene expression in a context-dependent and tissue-specific manner. In contrast to human, where comprehensive curated TF collections exist, bovine TFs are only rudimentary recorded and characterized. In this article, we present a manually-curated compendium of 865 sequence-specific DNA-binding bovines TFs, which we analyzed for domain family distribution, evolutionary conservation, and tissue-specific expression. In addition, we provide a list of putative transcription cofactors derived from known interactions with the identified TFs. Since there is a general lack of knowledge concerning the regulation of gene expression in cattle, the curated list of TF should provide a basis for an improved comprehension of regulatory mechanisms that are specific to the species.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted January 27, 2018.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
A comprehensive manually-curated Compendium of Bovine Transcription Factors
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
A comprehensive manually-curated Compendium of Bovine Transcription Factors
Marcela M de Souza, Juan M Vaquerizas, Adhemar Zerlotini, Ludwig Geistlinger, Benjamín Hernández-Rodríguez, Polyana C Tizioto, Jeremy F Taylor, Marina IP Rocha, Wellison JS Diniz, Luiz L Coutinho, Luciana CA Regitano
bioRxiv 254011; doi: https://doi.org/10.1101/254011
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
A comprehensive manually-curated Compendium of Bovine Transcription Factors
Marcela M de Souza, Juan M Vaquerizas, Adhemar Zerlotini, Ludwig Geistlinger, Benjamín Hernández-Rodríguez, Polyana C Tizioto, Jeremy F Taylor, Marina IP Rocha, Wellison JS Diniz, Luiz L Coutinho, Luciana CA Regitano
bioRxiv 254011; doi: https://doi.org/10.1101/254011

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Genomics
Subject Areas
All Articles
  • Animal Behavior and Cognition (3686)
  • Biochemistry (7774)
  • Bioengineering (5668)
  • Bioinformatics (21245)
  • Biophysics (10563)
  • Cancer Biology (8162)
  • Cell Biology (11915)
  • Clinical Trials (138)
  • Developmental Biology (6738)
  • Ecology (10388)
  • Epidemiology (2065)
  • Evolutionary Biology (13843)
  • Genetics (9694)
  • Genomics (13056)
  • Immunology (8123)
  • Microbiology (19956)
  • Molecular Biology (7833)
  • Neuroscience (42973)
  • Paleontology (318)
  • Pathology (1276)
  • Pharmacology and Toxicology (2256)
  • Physiology (3350)
  • Plant Biology (7208)
  • Scientific Communication and Education (1309)
  • Synthetic Biology (1999)
  • Systems Biology (5528)
  • Zoology (1126)