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- July 30, 2019.
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- Version 1 (February 15, 2018 - 08:15).
- Version 2 (January 28, 2019 - 08:27).
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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
Author Information
- Sarvenaz Choobdar1,2,X,
- Mehmet E. Ahsen3,X,
- Jake Crawford4,X,
- Mattia Tomasoni1,2,
- Tao Fang5,
- David Lamparter1,2,6,
- Junyuan Lin7,
- Benjamin Hescott8,
- Xiaozhe Hu7,
- Johnathan Mercer9,10,
- Ted Natoli11,
- Rajiv Narayan11,
- The DREAM Module Identification Challenge Consortium12,
- Aravind Subramanian11,
- Jitao D. Zhang5,
- Gustavo Stolovitzky3,13,
- Zoltán Kutalik2,14,
- Kasper Lage9,10,15,
- Donna K. Slonim4,16,
- Julio Saez-Rodriguez17,18,
- Lenore J. Cowen4,7,
- Sven Bergmann1,2,19,Y,* and
- Daniel Marbach1,2,5,Y,*
- 1Department of Computational Biology, University of Lausanne, Lausanne, Switzerland
- 2Swiss Institute of Bioinformatics, Lausanne, Switzerland
- 3Icahn Institute for Genomics and Multiscale Biology and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- 4Department of Computer Science, Tufts University, Medford, MA, USA
- 5Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, 4070 Basel, Switzerland
- 6Verge Genomics, San Francisco, CA, USA
- 7Department of Mathematics, Tufts University, Medford, MA, USA
- 8College of Computer and Information Science, Northeastern University, Boston, MA, USA
- 9Department of Surgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA
- 10Stanley Center at the Broad Institute of MIT and Harvard, Cambridge, MA, USA
- 11Broad Institute of Harvard and MIT, Cambridge, MA, USA
- 12Full list of members appears at the end of the paper.
- 13IBM T.J. Watson Research Center, Yorktown Heights, New York 10598, USA
- 14Institute of Social and Preventive Medicine (IUMSP), Lausanne University Hospital, Lausanne, Switzerland
- 15Institute for Biological Psychiatry, Mental Health Center Sct. Hans, University of Copenhagen, Roskilde, Denmark
- 16Department of Immunology, Tufts University School of Medicine, Medford, MA, USA
- 17European Bioinformatics Institute, European Molecular Biology Laboratory, Cambridge, UK
- 18RWTH Aachen University, Faculty of Medicine, Joint Research Center for Computational Biomedicine, Aachen, Germany
- 19Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa
- ↵*Correspondence: sven.bergmann{at}unil.ch (S.B.), daniel.marbach.dm1{at}roche.com (D.M.)