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Quantifying configuration-sampling error in Langevin simulations of complex molecular systems

View ORCID ProfileJosh Fass, View ORCID ProfileDavid A. Sivak, Gavin E. Crooks, View ORCID ProfileKyle A. Beauchamp, View ORCID ProfileBen Leimkuhler, John D. Chodera
doi: https://doi.org/10.1101/266619
Josh Fass
1Tri-Institutional PhD Program in Computational Biology & Medicine, New York, NY 10065;
6Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065; ,
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  • ORCID record for Josh Fass
  • For correspondence: josh.fass@choderalab.org john.chodera@choderalab.org
David A. Sivak
2Department of Physics, Simon Fraser University, Burnaby, BC V5A 1S6, Canada; ,
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  • For correspondence: dsivak@sfu.ca
Gavin E. Crooks
3Rigetti Computing;
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  • For correspondence: gec@threeplusone.com
Kyle A. Beauchamp
4Counsyl, South San Francisco, CA 94080;
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  • For correspondence: kyleabeauchamp@gmail.com
Ben Leimkuhler
5School of Mathematics and Maxwell Institute of Mathematical Sciences, James Clerk Maxwell Building, Kings Buildings, University of Edinburgh, Edinburgh, EH9 3JZ, UK; ,
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  • For correspondence: B.Leimkuhler@ed.ac.uk
John D. Chodera
6Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065; ,
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  • For correspondence: john.chodera@choderalab.org john.chodera@choderalab.org
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Article Information

doi 
https://doi.org/10.1101/266619
History 
  • February 16, 2018.

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  • You are currently viewing Version 1 of this article (February 16, 2018 - 21:39).
  • Version 2 (March 31, 2018 - 08:45).
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Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. Josh Fass1,6,
  2. David A. Sivak2,
  3. Gavin E. Crooks3,
  4. Kyle A. Beauchamp4,
  5. Ben Leimkuhler5 and
  6. John D. Chodera6,*
  1. 1Tri-Institutional PhD Program in Computational Biology & Medicine, New York, NY 10065; josh.fass{at}choderalab.org
  2. 2Department of Physics, Simon Fraser University, Burnaby, BC V5A 1S6, Canada; dsivak{at}sfu.ca, http://www.sfu.ca/physics/sivakgroup.html
  3. 3Rigetti Computing; gec{at}threeplusone.com
  4. 4Counsyl, South San Francisco, CA 94080; kyleabeauchamp{at}gmail.com
  5. 5School of Mathematics and Maxwell Institute of Mathematical Sciences, James Clerk Maxwell Building, Kings Buildings, University of Edinburgh, Edinburgh, EH9 3JZ, UK; B.Leimkuhler{at}ed.ac.uk, http://kac.maths.ed.ac.uk/~bl
  6. 6Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065; john.chodera{at}choderalab.org, http://choderalab.org
  1. ↵*Correspondence: john.chodera{at}choderalab.org
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Posted February 16, 2018.
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Quantifying configuration-sampling error in Langevin simulations of complex molecular systems
Josh Fass, David A. Sivak, Gavin E. Crooks, Kyle A. Beauchamp, Ben Leimkuhler, John D. Chodera
bioRxiv 266619; doi: https://doi.org/10.1101/266619
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Quantifying configuration-sampling error in Langevin simulations of complex molecular systems
Josh Fass, David A. Sivak, Gavin E. Crooks, Kyle A. Beauchamp, Ben Leimkuhler, John D. Chodera
bioRxiv 266619; doi: https://doi.org/10.1101/266619

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