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Tracing the Transitions from Pluripotency to Germ Cell Fate with CRISPR Screening

View ORCID ProfileJamie A. Hackett, Yun Huang, Ufuk Günesdogan, Kristjan Holm-Gretarsson, Toshihiro Kobayashi, View ORCID ProfileM. Azim Surani
doi: https://doi.org/10.1101/269811
Jamie A. Hackett
1Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK; Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK
2European Molecular Biology Laboratory (EMBL), Epigenetics and Neurobiology Unit, via Ramarini 32, 00015, Rome, Italy
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Yun Huang
1Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK; Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK
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Ufuk Günesdogan
1Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK; Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK
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Kristjan Holm-Gretarsson
2European Molecular Biology Laboratory (EMBL), Epigenetics and Neurobiology Unit, via Ramarini 32, 00015, Rome, Italy
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Toshihiro Kobayashi
1Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK; Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK
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M. Azim Surani
1Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK; Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK
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ABSTRACT

Early mammalian development entails a series of cell fate transitions that includes transit through naïve pluripotency to post-implantation epiblast. This subsequently gives rise to primordial germ cells (PGC), the founding population of the germline lineage. To investigate the gene regulatory networks that control these critical cell fate decisions, we developed a compound-reporter system to track cellular identity in a model of PGC specification (PGC-like cells; PGCLC), and coupled it with unbiased genome-wide CRISPR screening. This enabled identification of key genes both for exit from pluripotency and for acquisition of PGC fate, with further characterisation revealing a central role for the transcription factors Nr5a2 and Zfp296 in germline ontogeny. Abrogation of these genes results in significantly impaired PGCLC development due to widespread activation (Nr5a2−/−) or inhibition (Zfp296−/−) of WNT pathway components. This leads to aberrant upregulation of the somatic programme or failure to appropriately activate germline genes in PGCLC, respectively, and consequently loss of germ cell identity. Overall our study places Zfp296 and Nr5a2 as key components of an expanded PGC gene regulatory network, and outlines a transferable strategy for identifying critical regulators of complex cell fate transitions.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 22, 2018.
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Tracing the Transitions from Pluripotency to Germ Cell Fate with CRISPR Screening
Jamie A. Hackett, Yun Huang, Ufuk Günesdogan, Kristjan Holm-Gretarsson, Toshihiro Kobayashi, M. Azim Surani
bioRxiv 269811; doi: https://doi.org/10.1101/269811
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Tracing the Transitions from Pluripotency to Germ Cell Fate with CRISPR Screening
Jamie A. Hackett, Yun Huang, Ufuk Günesdogan, Kristjan Holm-Gretarsson, Toshihiro Kobayashi, M. Azim Surani
bioRxiv 269811; doi: https://doi.org/10.1101/269811

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