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Ordino: a visual analysis tool for ranking and exploring genes, cell lines, and tissue samples

View ORCID ProfileMarc Streit, View ORCID ProfileSamuel Gratzl, View ORCID ProfileHolger Stitz, Andreas Wernitznig, View ORCID ProfileThomas Zichner, Christian Haslinger
doi: https://doi.org/10.1101/277848
Marc Streit
1Institute of Computer Graphics, Johannes Kepler University Linz, Linz, Austria.
2datavisyn GmbH, Linz, Austria.
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Samuel Gratzl
1Institute of Computer Graphics, Johannes Kepler University Linz, Linz, Austria.
2datavisyn GmbH, Linz, Austria.
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Holger Stitz
1Institute of Computer Graphics, Johannes Kepler University Linz, Linz, Austria.
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Andreas Wernitznig
3Department of Pharmacology and Translational Research, Boehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
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Thomas Zichner
3Department of Pharmacology and Translational Research, Boehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
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Christian Haslinger
3Department of Pharmacology and Translational Research, Boehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
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Abstract

Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter, and explore genes, cell lines, and tissue samples based on pre-loaded data, including The Cancer Genome Atlas (TCGA) and the Cancer Cell Line Encyclopedia (CCLE), as well as manually uploaded information. A core component of Ordino is an interactive tabular data visualization that facilitates the user-driven prioritization process. Detail views of selected items complement the exploration. Findings can be stored, shared, and reproduced via the integrated session management.

Availability and Implementation Ordino is publicly available at https://ordino.caleydoapp.org.

The source code is released at https://github.com/Caleydo/ordino.

Footnotes

  • ↵* The last two authors should be regarded as joint last authors.

  • Email: marc.streit{at}jku.at, christian.haslinger{at}boehringer-ingelheim.com

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted August 10, 2018.
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Ordino: a visual analysis tool for ranking and exploring genes, cell lines, and tissue samples
Marc Streit, Samuel Gratzl, Holger Stitz, Andreas Wernitznig, Thomas Zichner, Christian Haslinger
bioRxiv 277848; doi: https://doi.org/10.1101/277848
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Ordino: a visual analysis tool for ranking and exploring genes, cell lines, and tissue samples
Marc Streit, Samuel Gratzl, Holger Stitz, Andreas Wernitznig, Thomas Zichner, Christian Haslinger
bioRxiv 277848; doi: https://doi.org/10.1101/277848

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