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Spatially clustered loci with multiple enhancers are frequent targets of HIV-1

Bojana Lucic, Heng-Chang Chen, Maja Kuzman, Eduard Zorita, Julia Wegner, Vera Minneker, Vassilis Roukos, Wei Wang, Raffaele Fronza, Manfred Schmidt, Monsef Benkirane, Ralph Stadhouders, Kristian Vlahovicek, Guillaume J Filion, View ORCID ProfileMarina Lusic
doi: https://doi.org/10.1101/287896
Bojana Lucic
1Department of Infectious Diseases, Integrative Virology, Heidelberg University Hospital and German Center for Infection Research, Heidelberg, Germany
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Heng-Chang Chen
2Genome Architecture, Gene Regulation, Stem Cells and Cancer Programme, Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain
8University Pompeu Fabra, Barcelona, Spain
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Maja Kuzman
3Bioinformatics Group, Division of Molecular Biology, Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
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Eduard Zorita
2Genome Architecture, Gene Regulation, Stem Cells and Cancer Programme, Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain
8University Pompeu Fabra, Barcelona, Spain
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Julia Wegner
1Department of Infectious Diseases, Integrative Virology, Heidelberg University Hospital and German Center for Infection Research, Heidelberg, Germany
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Vera Minneker
4Institute of Molecular Biology (IMB), Mainz, Germany
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Vassilis Roukos
4Institute of Molecular Biology (IMB), Mainz, Germany
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Wei Wang
5German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg, Germany
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Raffaele Fronza
5German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg, Germany
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Manfred Schmidt
5German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg, Germany
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Monsef Benkirane
6Institute of Human Genetics (IGH). Montpellier, France
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Ralph Stadhouders
7Department of Pulmonary Medicine, Department of Cell Biology, Erasmus MC, Rotterdam, The Netherlands
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Kristian Vlahovicek
3Bioinformatics Group, Division of Molecular Biology, Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
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  • For correspondence: kristian@bioinfo.hr guillaume.filion@gmail.com Marina.lusic@med.uni-heidelberg.de
Guillaume J Filion
2Genome Architecture, Gene Regulation, Stem Cells and Cancer Programme, Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain
8University Pompeu Fabra, Barcelona, Spain
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  • For correspondence: kristian@bioinfo.hr guillaume.filion@gmail.com Marina.lusic@med.uni-heidelberg.de
Marina Lusic
1Department of Infectious Diseases, Integrative Virology, Heidelberg University Hospital and German Center for Infection Research, Heidelberg, Germany
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  • ORCID record for Marina Lusic
  • For correspondence: kristian@bioinfo.hr guillaume.filion@gmail.com Marina.lusic@med.uni-heidelberg.de
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Article Information

doi 
https://doi.org/10.1101/287896
History 
  • March 24, 2018.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.

Author Information

  1. Bojana Lucic1,#,
  2. Heng-Chang Chen2,8,#,
  3. Maja Kuzman3,#,
  4. Eduard Zorita2,8,#,
  5. Julia Wegner1,§,
  6. Vera Minneker4,
  7. Vassilis Roukos4,
  8. Wei Wang5,
  9. Raffaele Fronza5,
  10. Manfred Schmidt5,
  11. Monsef Benkirane6,
  12. Ralph Stadhouders7,
  13. Kristian Vlahovicek3,*,
  14. Guillaume J Filion2,8,* and
  15. Marina Lusic1,*
  1. 1Department of Infectious Diseases, Integrative Virology, Heidelberg University Hospital and German Center for Infection Research, Heidelberg, Germany
  2. 2Genome Architecture, Gene Regulation, Stem Cells and Cancer Programme, Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain
  3. 3Bioinformatics Group, Division of Molecular Biology, Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
  4. 4Institute of Molecular Biology (IMB), Mainz, Germany
  5. 5German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg, Germany
  6. 6Institute of Human Genetics (IGH). Montpellier, France
  7. 7Department of Pulmonary Medicine, Department of Cell Biology, Erasmus MC, Rotterdam, The Netherlands
  8. 8University Pompeu Fabra, Barcelona, Spain
  1. ↵*Addresses for correspondence: Kristian Vlahovicek, PhD kristian{at}bioinfo.hr; Guillaume J. Filion, PhD guillaume.filion{at}gmail.com; Marina Lusic, PhD Marina.lusic{at}med.uni-heidelberg.de
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Posted March 24, 2018.
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Spatially clustered loci with multiple enhancers are frequent targets of HIV-1
Bojana Lucic, Heng-Chang Chen, Maja Kuzman, Eduard Zorita, Julia Wegner, Vera Minneker, Vassilis Roukos, Wei Wang, Raffaele Fronza, Manfred Schmidt, Monsef Benkirane, Ralph Stadhouders, Kristian Vlahovicek, Guillaume J Filion, Marina Lusic
bioRxiv 287896; doi: https://doi.org/10.1101/287896
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Spatially clustered loci with multiple enhancers are frequent targets of HIV-1
Bojana Lucic, Heng-Chang Chen, Maja Kuzman, Eduard Zorita, Julia Wegner, Vera Minneker, Vassilis Roukos, Wei Wang, Raffaele Fronza, Manfred Schmidt, Monsef Benkirane, Ralph Stadhouders, Kristian Vlahovicek, Guillaume J Filion, Marina Lusic
bioRxiv 287896; doi: https://doi.org/10.1101/287896

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